Aliases for HSD52 Gene

Subcategory (RNA class) for HSD52 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for HSD52 Gene

  • Uncharacterized LOC729467 3
  • NONHSAG001634 92
  • HSALNG0003969 167
  • Lnc-JUN-5 168

External Ids for HSD52 Gene

Previous GeneCards Identifiers for HSD52 Gene

  • GC01M059599

Summaries for HSD52 Gene

GeneCards Summary for HSD52 Gene

HSD52 (Uncharacterized LOC729467) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSD52 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSD52 Gene

Genomics for HSD52 Gene

GeneHancer (GH) Regulatory Elements for HSD52 Gene

Promoters and enhancers for HSD52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J059145 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.1 -71 2.1 TCF12 ZNF10 ZIC2 ZBTB26 RELA POLR2A ZNF341 CTCF SP2 KAT7 HSD52 ENSG00000224609 piR-33432-012 LINC01358
GH01J059148 Enhancer 0.5 Ensembl dbSUPER 500.7 -1.3 -1294 0.2 ZNF189 L3MBTL2 HSD52 piR-33432-012 ENSG00000224609 LINC01358
GH01J059150 Enhancer 0.4 Ensembl dbSUPER 500.7 -1.7 -1694 0.2 L3MBTL2 HSD52 piR-33432-012 ENSG00000224609 LINC01358
GH01J059149 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.0 -4018 3.1 TCF12 JUND FOS REST TRIM28 EP300 RBM25 DEK KDM1A FOXA2 ENSG00000224609 JUN LINC01135 FGGY HSD52 piR-33432-012 LINC01358
GH01J059141 Enhancer 1 ENCODE dbSUPER 0.7 +3.5 3468 4 TCF12 JUND FOS TEAD4 ZIC2 REST SMARCC2 TEAD1 CTBP1 HDAC2 JUN LINC01135 HSD52 lnc-JUN-4 ENSG00000224609 LINC01358
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSD52 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HSD52 Gene

Genomic Locations for HSD52 Gene
chr1:59,131,936-59,146,807
(GRCh38/hg38)
Size:
14,872 bases
Orientation:
Minus strand
chr1:59,597,608-59,664,293
(GRCh37/hg19)
Size:
66,686 bases
Orientation:
Minus strand

Genomic View for HSD52 Gene

Genes around HSD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSD52 Gene

Proteins for HSD52 Gene

No data available for DME Specific Peptides for HSD52 Gene

Domains & Families for HSD52 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSD52 Gene

Function for HSD52 Gene

Phenotypes From GWAS Catalog for HSD52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSD52 Gene

Localization for HSD52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSD52 Gene

Pathways & Interactions for HSD52 Gene

PathCards logo

SuperPathways for HSD52 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HSD52 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSD52 Gene

Drugs & Compounds for HSD52 Gene

No Compound Related Data Available

Transcripts for HSD52 Gene

mRNA/cDNA for HSD52 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HSD52 Gene

No ASD Table

Relevant External Links for HSD52 Gene

GeneLoc Exon Structure for
HSD52

Expression for HSD52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HSD52 Gene

mRNA differential expression in normal tissues according to GTEx for HSD52 Gene

This gene is overexpressed in Testis (x18.4), Muscle - Skeletal (x15.6), and Adipose - Subcutaneous (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HSD52

SOURCE GeneReport for Unigene cluster for HSD52 Gene:

Hs.662291
genes like me logo Genes that share expression patterns with HSD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSD52 Gene

Orthologs for HSD52 Gene

No data available for Orthologs and Evolution for HSD52 Gene

Paralogs for HSD52 Gene

No data available for Paralogs for HSD52 Gene

Variants for HSD52 Gene

Additional dbSNP identifiers (rs#s) for HSD52 Gene

Structural Variations from Database of Genomic Variants (DGV) for HSD52 Gene

Variant ID Type Subtype PubMed ID
nsv829970 CNV gain 17160897

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for HSD52 Gene

Disorders for HSD52 Gene

No disorders were found for HSD52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSD52 Gene

Publications for HSD52 Gene

No publications were found for HSD52 Gene.

No data available for Mastermind for HSD52 Gene

Products for HSD52 Gene

Sources for HSD52 Gene