Aliases for HSALNG0089858 Gene

Data sources for HSALNG0089858 Gene:

Subcategory (RNA class) for HSALNG0089858 Gene

lncRNA

Aliases for HSALNG0089858 Gene

No data available for External Ids for HSALNG0089858 Gene

Summaries for HSALNG0089858 Gene

GeneCards Summary for HSALNG0089858 Gene

HSALNG0089858 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSALNG0089858 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSALNG0089858 Gene

Genomics for HSALNG0089858 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HSALNG0089858 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J024080 Enhancer 1.5 VISTA UCNEbase Ensembl ENCODE 250.7 +1.2 1210 1.8 THAP11 ZNF511 KMT2B PRDM6 ZNF362 ZNF384 ZNF18 IKZF5 KDM3A L3MBTL2 HSALNG0089858 HSALNG0089859 SOX5 lnc-SOX5-5
GH12J024078 Enhancer 1.1 Ensembl ENCODE 250.7 -1.9 -1854 1.4 FEZF1 CEBPA ZEB1 HOMEZ KDM6A THAP11 FOXA2 ZNF639 MAFF SMAD4 HSALNG0089858 L13714-077 SOX5 lnc-SOX5-5
GH12J024070 Enhancer 1.1 Ensembl CraniofacialAtlas 0.4 -10.5 -10515 1 ZSCAN16 FEZF1 CEBPA FOXA1 HOMEZ KDM6A ZNF610 THAP11 FOXA2 ZNF511 L13714-077 HSALNG0089858 SOX5 lnc-SOX5-5
GH12J024066 Enhancer 0.7 Ensembl 0.4 -13.5 -13514 1 FEZF1 PRDM6 ZFP37 JUND ZNF189 BCL6B ZNF366 KLF10 PKNOX1 ZEB2 L13714-077 HSALNG0089858 SOX5 lnc-SOX5-5
GH12J024083 Enhancer 0.3 Ensembl 0.7 +3.1 3086 0.6 MAFK IKZF1 HSALNG0089858 HSALNG0089859 SOX5 lnc-SOX5-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSALNG0089858 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HSALNG0089858 Gene

Latest Assembly
chr12:24,080,615-24,114,248
(GRCh38/hg38)
Size:
33,634 bases
Orientation:
Plus strand

Genomic View for HSALNG0089858 Gene

Genes around HSALNG0089858 on UCSC Golden Path with GeneCards custom track
HSALNG0089858 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HSALNG0089858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSALNG0089858 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HSALNG0089858 Gene

Proteins for HSALNG0089858 Gene

Post-translational modifications for HSALNG0089858 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSALNG0089858 Gene

Domains & Families for HSALNG0089858 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSALNG0089858 Gene

Function for HSALNG0089858 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSALNG0089858 Gene

Localization for HSALNG0089858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSALNG0089858 Gene

Pathways & Interactions for HSALNG0089858 Gene

PathCards logo

SuperPathways for HSALNG0089858 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSALNG0089858 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSALNG0089858 Gene

Drugs & Compounds for HSALNG0089858 Gene

No Compound Related Data Available

Transcripts for HSALNG0089858 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HSALNG0089858 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0001BF442F_9606 lncRNA 704 1

LncBook: HSALNT0186627,

HSALNG0089858 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HSALNG0089858 Gene

No ASD Table

Relevant External Links for HSALNG0089858 Gene

GeneLoc Exon Structure for
HSALNG0089858

No data available for mRNA/cDNA for HSALNG0089858 Gene

Expression for HSALNG0089858 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSALNG0089858 Gene

Orthologs for HSALNG0089858 Gene

No data available for Orthologs and Evolution for HSALNG0089858 Gene

Paralogs for HSALNG0089858 Gene

No data available for Paralogs for HSALNG0089858 Gene

Variants for HSALNG0089858 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HSALNG0089858 Gene

Disorders for HSALNG0089858 Gene

No disorders were found for HSALNG0089858 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSALNG0089858 Gene

Publications for HSALNG0089858 Gene

No publications were found for HSALNG0089858 Gene.

No data available for Mastermind for HSALNG0089858 Gene

Products for HSALNG0089858 Gene

Sources for HSALNG0089858 Gene