Aliases for HSALNG0088292 Gene

Data sources for HSALNG0088292 Gene:

Subcategory (RNA class) for HSALNG0088292 Gene

lncRNA

Aliases for HSALNG0088292 Gene

No data available for External Ids for HSALNG0088292 Gene

Summaries for HSALNG0088292 Gene

GeneCards Summary for HSALNG0088292 Gene

HSALNG0088292 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSALNG0088292 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSALNG0088292 Gene

Genomics for HSALNG0088292 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HSALNG0088292 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J131767 Enhancer 0.3 Ensembl dbSUPER 250.7 +1.1 1102 0.2 HSALNG0088292 ENSG00000238117 lnc-ADAMTS15-12 NTM
GH11J131747 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.0 18049 3.5 CTCF TRIM22 SMC3 TEAD3 RAD21 JUND ZNF143 CHD2 YY1 MNT NTM lnc-ADAMTS15-12 HSALNG0088292
GH11J131744 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +21.8 21773 2.1 MAFF MAFK JUND BHLHE40 EP300 CEBPB FOS NTM lnc-ADAMTS15-12 HSALNG0088292
GH11J131756 Enhancer 0.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.4 10425 1.2 EP300 NTM HSALNG0088292 lnc-ADAMTS15-12
GH11J131759 Enhancer 0.6 ENCODE dbSUPER 0.4 +7.1 7131 2.2 CTCF MAFK BHLHE40 CEBPB FOS ENSG00000238117 HSALNG0088292 lnc-ADAMTS15-12 NTM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSALNG0088292 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HSALNG0088292 Gene

Latest Assembly
chr11:131,715,466-131,767,403
(GRCh38/hg38)
Size:
51,938 bases
Orientation:
Minus strand

Genomic View for HSALNG0088292 Gene

Genes around HSALNG0088292 on UCSC Golden Path with GeneCards custom track
HSALNG0088292 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HSALNG0088292 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSALNG0088292 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HSALNG0088292 Gene

Proteins for HSALNG0088292 Gene

Post-translational modifications for HSALNG0088292 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSALNG0088292 Gene

Domains & Families for HSALNG0088292 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSALNG0088292 Gene

Function for HSALNG0088292 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSALNG0088292 Gene

Localization for HSALNG0088292 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSALNG0088292 Gene

Pathways & Interactions for HSALNG0088292 Gene

PathCards logo

SuperPathways for HSALNG0088292 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSALNG0088292 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSALNG0088292 Gene

Drugs & Compounds for HSALNG0088292 Gene

No Compound Related Data Available

Transcripts for HSALNG0088292 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HSALNG0088292 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0001BDA705_9606 lncRNA 5761 1

LncBook: HSALNT0183646,

URS0000EBBF78_9606 lncRNA 4621 1

LncBook: HSALNT0183650,

URS0001BF70C8_9606 lncRNA 4621 1

LncBook: HSALNT0183650,

URS0001BD3D7B_9606 lncRNA 1726 1

LncBook: HSALNT0183647,

URS0001BE88CC_9606 lncRNA 1680 1

LncBook: HSALNT0183651,

HSALNG0088292 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HSALNG0088292 Gene

No ASD Table

Relevant External Links for HSALNG0088292 Gene

GeneLoc Exon Structure for
HSALNG0088292

No data available for mRNA/cDNA for HSALNG0088292 Gene

Expression for HSALNG0088292 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSALNG0088292 Gene

Orthologs for HSALNG0088292 Gene

No data available for Orthologs and Evolution for HSALNG0088292 Gene

Paralogs for HSALNG0088292 Gene

No data available for Paralogs for HSALNG0088292 Gene

Variants for HSALNG0088292 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HSALNG0088292 Gene

Disorders for HSALNG0088292 Gene

No disorders were found for HSALNG0088292 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSALNG0088292 Gene

Publications for HSALNG0088292 Gene

No publications were found for HSALNG0088292 Gene.

No data available for Mastermind for HSALNG0088292 Gene

Products for HSALNG0088292 Gene

Sources for HSALNG0088292 Gene