Aliases for HSALNG0087379 Gene

Data sources for HSALNG0087379 Gene:

Subcategory (RNA class) for HSALNG0087379 Gene

lncRNA

Aliases for HSALNG0087379 Gene

No data available for External Ids for HSALNG0087379 Gene

Summaries for HSALNG0087379 Gene

GeneCards Summary for HSALNG0087379 Gene

HSALNG0087379 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSALNG0087379 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSALNG0087379 Gene

Genomics for HSALNG0087379 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HSALNG0087379 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J116052 Enhancer 0.5 Ensembl ENCODE 250.7 -0.4 -370 2 POLR2A USF1 HSALNG0087379 LOC105369513 lnc-CADM1-12 CADM1 lnc-CADM1-3 BUD13
GH11J116070 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 +19.2 19226 5.6 SP1 BCL11A NR2C1 ZIC2 SIN3A CTCF TRIM22 IRF4 EBF1 SMARCA5 LOC105369513 HSALNG0087379 CADM1 lnc-CADM1-3 BUD13
GH11J116061 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 +9.0 9030 2.4 ZNF571 ZNF624 LCORL RCOR1 GATA2 NFIB NFIA IKZF1 TRIM28 ZNF544 HSALNG0087379 LOC105369513 CADM1 lnc-CADM1-3 BUD13
GH11J116078 Enhancer 0.7 Ensembl ENCODE 0.3 +24.4 24431 0.8 CTCF ZIC2 SMC3 SMARCA5 RAD21 RCOR1 GATA2 TRIM28 ZNF143 LOC105369513 HSALNG0087379 lnc-CADM1-3 CADM1 BUD13
GH11J116066 Enhancer 0.4 Ensembl 0.4 +12.1 12131 1.8 EBF1 IKZF1 IKZF2 RUNX3 HSALNG0087379 LOC105369513 lnc-CADM1-3 BUD13 CADM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSALNG0087379 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HSALNG0087379 Gene

Latest Assembly
chr11:116,053,770-116,076,669
(GRCh38/hg38)
Size:
22,900 bases
Orientation:
Plus strand

Genomic View for HSALNG0087379 Gene

Genes around HSALNG0087379 on UCSC Golden Path with GeneCards custom track
HSALNG0087379 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HSALNG0087379 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSALNG0087379 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HSALNG0087379 Gene

Proteins for HSALNG0087379 Gene

Post-translational modifications for HSALNG0087379 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSALNG0087379 Gene

Domains & Families for HSALNG0087379 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSALNG0087379 Gene

Function for HSALNG0087379 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSALNG0087379 Gene

Localization for HSALNG0087379 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSALNG0087379 Gene

Pathways & Interactions for HSALNG0087379 Gene

PathCards logo

SuperPathways for HSALNG0087379 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSALNG0087379 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSALNG0087379 Gene

Drugs & Compounds for HSALNG0087379 Gene

No Compound Related Data Available

Transcripts for HSALNG0087379 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HSALNG0087379 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0001BF3A98_9606 lncRNA 4088 1

LncBook: HSALNT0181609,

URS0001BE48D9_9606 lncRNA 2208 1

LncBook: HSALNT0181608,

HSALNG0087379 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HSALNG0087379 Gene

No ASD Table

Relevant External Links for HSALNG0087379 Gene

GeneLoc Exon Structure for
HSALNG0087379

No data available for mRNA/cDNA for HSALNG0087379 Gene

Expression for HSALNG0087379 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSALNG0087379 Gene

Orthologs for HSALNG0087379 Gene

No data available for Orthologs and Evolution for HSALNG0087379 Gene

Paralogs for HSALNG0087379 Gene

No data available for Paralogs for HSALNG0087379 Gene

Variants for HSALNG0087379 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HSALNG0087379 Gene

Disorders for HSALNG0087379 Gene

No disorders were found for HSALNG0087379 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSALNG0087379 Gene

Publications for HSALNG0087379 Gene

No publications were found for HSALNG0087379 Gene.

No data available for Mastermind for HSALNG0087379 Gene

Products for HSALNG0087379 Gene

Sources for HSALNG0087379 Gene