Aliases for HSALNG0006328-001 Gene

Data sources for HSALNG0006328-001 Gene:

RNA type for HSALNG0006328-001 Gene

lncRNA

Aliases for HSALNG0006328-001 Gene

No data available for External Ids for HSALNG0006328-001 Gene

Summaries for HSALNG0006328-001 Gene

GeneCards Summary for HSALNG0006328-001 Gene

HSALNG0006328-001 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSALNG0006328-001 Gene



  • Search for HSALNG0006328-001 at DataMed
  • Search for HSALNG0006328-001 at HumanCyc

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSALNG0006328-001 Gene

Genomics for HSALNG0006328-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HSALNG0006328-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116414 Enhancer 1.1 ENCODE dbSUPER 250.7 +1.1 1059 2.4 NCOR1 IKZF1 ZNF592 NFIC ZIC2 SMAD5 HES1 BHLHE40 MBD2 TBP HSALNG0006328-001 HSALNG0006328-002 ATP1A1-AS1 ATP1A1 CD58
GH01J116413 Enhancer 0.4 Ensembl dbSUPER 250.7 -1.7 -1718 0.2 ZNF664 HSALNG0006328-001 RF00026-064 RNU6-817P ATP1A1-AS1 NONHSAG002531.2 ATP1A1 CD58
GH01J116417 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.5 3480 2.2 BCLAF1 ZNF207 IKZF1 MYC ZNF600 ZNF580 ZNF592 POLR2A BRCA1 ZIC2 HSALNG0006328-002 CASQ2 CD58 ATP1A1-AS1 HSALNG0006328-001 ATP1A1
GH01J116420 Enhancer 0.9 ENCODE 0.4 +5.6 5575 0.2 NCOR1 NFIC HES1 BHLHE40 MBD2 MNT ZNF513 ARNT FOXA2 NBN ATP1A1-AS1 HSALNG0006328-002 HSALNG0006328-001 ATP1A1 CD58
GH01J116421 Enhancer 0.7 Ensembl 0.4 +6.0 5981 0.4 SMAD4 EGR1 NR2F6 RXRB GMEB1 ZNF580 ATF1 KDM1A ATF3 GATAD2A ATP1A1-AS1 HSALNG0006328-002 HSALNG0006328-001 ATP1A1 CD58
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSALNG0006328-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HSALNG0006328-001 Gene

Latest Assembly
chr1:116,415,019-116,423,455
(GRCh38/hg38)
Size:
8,437 bases
Orientation:
Plus strand

Genomic View for HSALNG0006328-001 Gene

Genes around HSALNG0006328-001 on UCSC Golden Path with GeneCards custom track
HSALNG0006328-001 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HSALNG0006328-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSALNG0006328-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HSALNG0006328-001 Gene

Proteins for HSALNG0006328-001 Gene

Post-translational modifications for HSALNG0006328-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSALNG0006328-001 Gene

Domains & Families for HSALNG0006328-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSALNG0006328-001 Gene

Function for HSALNG0006328-001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSALNG0006328-001 Gene

Localization for HSALNG0006328-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSALNG0006328-001 Gene

Pathways & Interactions for HSALNG0006328-001 Gene

PathCards logo

SuperPathways for HSALNG0006328-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSALNG0006328-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSALNG0006328-001 Gene

Drugs & Compounds for HSALNG0006328-001 Gene

No Compound Related Data Available

Transcripts for HSALNG0006328-001 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HSALNG0006328-001 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000EB1E80_9606 lncRNA 3216 1

LncBook: HSALNT0013246,

URS0001BCB7A5_9606 lncRNA 2593 1

LncBook: HSALNT0013248,

URS0001BF089A_9606 lncRNA 2217 1

LncBook: HSALNT0013245,

HSALNG0006328-001 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HSALNG0006328-001 Gene

No ASD Table

Relevant External Links for HSALNG0006328-001 Gene

GeneLoc Exon Structure for
HSALNG0006328-001

No data available for mRNA/cDNA for HSALNG0006328-001 Gene

Expression for HSALNG0006328-001 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSALNG0006328-001 Gene

Orthologs for HSALNG0006328-001 Gene

No data available for Orthologs and Evolution for HSALNG0006328-001 Gene

Paralogs for HSALNG0006328-001 Gene

No data available for Paralogs for HSALNG0006328-001 Gene

Variants for HSALNG0006328-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HSALNG0006328-001 Gene

Disorders for HSALNG0006328-001 Gene

No disorders were found for HSALNG0006328-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSALNG0006328-001 Gene

Publications for HSALNG0006328-001 Gene

No publications were found for HSALNG0006328-001 Gene.

No data available for Mastermind for HSALNG0006328-001 Gene

Products for HSALNG0006328-001 Gene

Sources for HSALNG0006328-001 Gene