Aliases for HSALNG0005788 Gene

Data sources for HSALNG0005788 Gene:

RNA type for HSALNG0005788 Gene

lncRNA

Aliases for HSALNG0005788 Gene

No data available for External Ids for HSALNG0005788 Gene

Summaries for HSALNG0005788 Gene

GeneCards Summary for HSALNG0005788 Gene

HSALNG0005788 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HSALNG0005788 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HSALNG0005788 Gene

Genomics for HSALNG0005788 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HSALNG0005788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J107961 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.5 -2543 5.2 ZNF600 POLR2A ZNF341 SIN3A ZNF217 CTBP1 MAFF YY1 MAFK ZNF205 VAV3 VAV3-AS1 HSALNG0005788 HG984097 TRUND-NNN8-1 NTNG1
GH01J108000 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +34.1 34050 2.1 NFIC ZIC2 FEZF1 TCF7L2 GLIS1 NFIA GATA2 ZNF384 ZNF692 MZF1 VAV3 VAV3-AS1 HSALNG0005789 HSALNG0005788 SLC25A24
GH01J107991 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +25.2 25192 1.6 REST ZNF398 EGR2 FOS ZFHX2 VAV3-AS1 VAV3 LINC02785 HSALNG0005789 HSALNG0005788 SLC25A24
GH01J107976 Enhancer 0.5 Ensembl 0.4 +10.4 10389 1.2 ZNF843 NFE2 PRDM6 ZNF189 KLF10 BCL6B TSHZ1 GPSM2 HSALNG0005788 VAV3 VAV3-AS1 HSALNG0005789 SLC25A24
GH01J107993 Enhancer 0.6 Ensembl dbSUPER 0.3 +27.6 27589 0.8 ZNF341 GLIS1 SP7 RFX1 VAV3-AS1 VAV3 HSALNG0005789 HSALNG0005788 SLC25A24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HSALNG0005788 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HSALNG0005788 Gene

Latest Assembly
chr1:107,966,412-108,011,647
(GRCh38/hg38)
Size:
45,236 bases
Orientation:
Plus strand

Genomic View for HSALNG0005788 Gene

Genes around HSALNG0005788 on UCSC Golden Path with GeneCards custom track
HSALNG0005788 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

HSALNG0005788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSALNG0005788 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for HSALNG0005788 Gene

Proteins for HSALNG0005788 Gene

Post-translational modifications for HSALNG0005788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSALNG0005788 Gene

Domains & Families for HSALNG0005788 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HSALNG0005788 Gene

Function for HSALNG0005788 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSALNG0005788 Gene

Localization for HSALNG0005788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSALNG0005788 Gene

Pathways & Interactions for HSALNG0005788 Gene

PathCards logo

SuperPathways for HSALNG0005788 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSALNG0005788 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HSALNG0005788 Gene

Drugs & Compounds for HSALNG0005788 Gene

No Compound Related Data Available

Transcripts for HSALNG0005788 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HSALNG0005788 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0001BD5656_9606 lncRNA 931 1

LncBook: HSALNT0012050,

HSALNG0005788 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HSALNG0005788 Gene

No ASD Table

Relevant External Links for HSALNG0005788 Gene

GeneLoc Exon Structure for
HSALNG0005788

No data available for mRNA/cDNA for HSALNG0005788 Gene

Expression for HSALNG0005788 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSALNG0005788 Gene

Orthologs for HSALNG0005788 Gene

No data available for Orthologs and Evolution for HSALNG0005788 Gene

Paralogs for HSALNG0005788 Gene

No data available for Paralogs for HSALNG0005788 Gene

Variants for HSALNG0005788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HSALNG0005788 Gene

Disorders for HSALNG0005788 Gene

No disorders were found for HSALNG0005788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HSALNG0005788 Gene

Publications for HSALNG0005788 Gene

No publications were found for HSALNG0005788 Gene.

No data available for Mastermind for HSALNG0005788 Gene

Products for HSALNG0005788 Gene

Sources for HSALNG0005788 Gene