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Aliases for HRH4 Gene

Aliases for HRH4 Gene

  • Histamine Receptor H4 2 3 5
  • G-Protein Coupled Receptor 105 3 4
  • Pfi-013 3 4
  • GPCR105 3 4
  • AXOR35 3 4
  • GPRv53 3 4
  • SP9144 3 4
  • HH4R 3 4
  • H4R 3 4
  • Histamine H4 Receptor 3
  • BG26 3
  • H4 3

External Ids for HRH4 Gene

Previous GeneCards Identifiers for HRH4 Gene

  • GC18P021933
  • GC18P021772
  • GC18P020292
  • GC18P020294
  • GC18P022040
  • GC18P018896

Summaries for HRH4 Gene

Entrez Gene Summary for HRH4 Gene

  • Histamine is a ubiquitous messenger molecule released from mast cells, enterochromaffin-like cells, and neurons. Its various actions are mediated by a family of histamine receptors, which are a subset of the G-protein coupled receptor superfamily. This gene encodes a histamine receptor that is predominantly expressed in haematopoietic cells. The protein is thought to play a role in inflammation and allergy reponses. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2009]

GeneCards Summary for HRH4 Gene

HRH4 (Histamine Receptor H4) is a Protein Coding gene. Diseases associated with HRH4 include Paraneoplastic Cerebellar Degeneration and Pericarditis. Among its related pathways are GPCRs, Other and Akt Signaling. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and histamine binding. An important paralog of this gene is HRH3.

UniProtKB/Swiss-Prot for HRH4 Gene

  • The H4 subclass of histamine receptors could mediate the histamine signals in peripheral tissues. Displays a significant level of constitutive activity (spontaneous activity in the absence of agonist).

Tocris Summary for HRH4 Gene

  • Histamine H4 receptors are Galphai/o-protein-coupled receptors, first cloned in 2000. H4 receptors are expressed at high levels in the gastrointestinal tract, spleen, thymus, medullary cells, bone marrow and peripheral hematopoietic cells, including eosinophils and T lymphocytes.

Gene Wiki entry for HRH4 Gene

Additional gene information for HRH4 Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HRH4 Gene

Genomics for HRH4 Gene

GeneHancer (GH) Regulatory Elements for HRH4 Gene

Promoters and enhancers for HRH4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J024460 Promoter 0.5 EPDnew 650.7 +0.1 50 0.1 HRH4 ENSG00000264695
GH18J024514 Enhancer 0.5 ENCODE 10.7 +54.1 54054 0.1 CTCF NFYB ZNF143 BACH1 FOS HRH4 ENSG00000266489 LOC646629
GH18J024465 Enhancer 0.4 Ensembl 0.7 +4.9 4933 0.2 ZNF189 POLR2A HRH4 ENSG00000264695
GH18J024487 Enhancer 0.6 ENCODE 0.3 +27.3 27304 0.2 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 FOXA1 ZSCAN21 SMC3 ZNF143 ENSG00000264695 HRH4
GH18J024488 Enhancer 0.6 Ensembl 0.3 +27.5 27532 0.2 CTCF ZSCAN4 TRIM22 REST ZNF2 RAD21 ZSCAN21 ZFHX2 TARDBP EGR2 ENSG00000264695 HRH4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HRH4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HRH4 gene promoter:
  • AP-1
  • c-Jun
  • ATF-2
  • POU2F1a
  • POU2F1
  • AML1a
  • ISGF-3
  • En-1
  • LCR-F1

Genomic Locations for HRH4 Gene

Genomic Locations for HRH4 Gene
chr18:24,460,568-24,487,427
(GRCh38/hg38)
Size:
26,860 bases
Orientation:
Plus strand
chr18:22,040,593-22,059,921
(GRCh37/hg19)
Size:
19,329 bases
Orientation:
Plus strand

Genomic View for HRH4 Gene

Genes around HRH4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HRH4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HRH4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HRH4 Gene

Proteins for HRH4 Gene

  • Protein details for HRH4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H3N8-HRH4_HUMAN
    Recommended name:
    Histamine H4 receptor
    Protein Accession:
    Q9H3N8
    Secondary Accessions:
    • B0YJ19
    • B2KJ48
    • Q4G0I6
    • Q9GZQ0

    Protein attributes for HRH4 Gene

    Size:
    390 amino acids
    Molecular mass:
    44496 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Does not bind diphenhydramine, loratadine, ranitidine, cimetidine and chlorpheniramine. Shows modest affinity for dimaprit, impromidine, clobenpropit, thioperamide, burimamide clozapine, immepip and imetit. The order of inhibitory activity was imetit > clobenpropit > burimamide > thioperamide. Clobenpropit behaves as a partial agonist, dimaprit and impromidine show some agonist activity while clozapine behaves as a full agonist. Thioperamide shows inverse agonism (enhances cAMP activity). The order of inhibitory activity of histamine derivatives was Histamine > N-alpha-methylhistamine > R(-)-alpha-methylhistamine > S(+)-alpha-methylhistamine. Both N-alpha-methylhistamine > R(-)-alpha-methylhistamine behave as full agonists.

    Alternative splice isoforms for HRH4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HRH4 Gene

Post-translational modifications for HRH4 Gene

  • Glycosylation at Asn9 and Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for HRH4 Gene

No data available for DME Specific Peptides for HRH4 Gene

Domains & Families for HRH4 Gene

Gene Families for HRH4 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for HRH4 Gene

Suggested Antigen Peptide Sequences for HRH4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H3N8

UniProtKB/Swiss-Prot:

HRH4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with HRH4: view

Function for HRH4 Gene

Molecular function for HRH4 Gene

UniProtKB/Swiss-Prot Function:
The H4 subclass of histamine receptors could mediate the histamine signals in peripheral tissues. Displays a significant level of constitutive activity (spontaneous activity in the absence of agonist).
UniProtKB/Swiss-Prot Induction:
Expression is either up-regulated or down-regulated upon activation of the lymphoid tissues and this regulation may depend on the presence of IL10/interleukin-10 or IL13/interleukin-13.

Phenotypes From GWAS Catalog for HRH4 Gene

Gene Ontology (GO) - Molecular Function for HRH4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004969 histamine receptor activity NAS 10973974
genes like me logo Genes that share ontologies with HRH4: view
genes like me logo Genes that share phenotypes with HRH4: view

Animal Models for HRH4 Gene

MGI Knock Outs for HRH4:

Animal Model Products

  • Taconic Biosciences Mouse Models for HRH4

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HRH4

Clone Products

  • Addgene plasmids for HRH4

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for HRH4 Gene

Localization for HRH4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HRH4 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HRH4 gene
Compartment Confidence
plasma membrane 5
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for HRH4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with HRH4: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for HRH4 Gene

Pathways & Interactions for HRH4 Gene

genes like me logo Genes that share pathways with HRH4: view

Gene Ontology (GO) - Biological Process for HRH4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006954 inflammatory response IBA --
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007194 negative regulation of adenylate cyclase activity IBA --
GO:0007204 positive regulation of cytosolic calcium ion concentration IEA --
genes like me logo Genes that share ontologies with HRH4: view

No data available for SIGNOR curated interactions for HRH4 Gene

Drugs & Compounds for HRH4 Gene

(88) Drugs for HRH4 Gene - From: DrugBank, PharmGKB, DGIdb, IUPHAR, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Histamine Approved, Investigational Pharma Full agonist, Agonist, Target, agonist 1105
Clozapine Approved Pharma Antagonist, Positive, Allosteric regulator, Full agonist, Agonist, Inverse agonist, antagonist, Target Antipsychotic medication 121
Amitriptyline Approved Pharma Antagonist, Target, binder 113
Amoxapine Approved Pharma Antagonist, Target, binder GLYT2a transport activity inhibitor 0
Chlorpromazine Approved, Investigational, Vet_approved Pharma Antagonist, Inverse agonist, Channel blocker, Target, binder 19

(5) Additional Compounds for HRH4 Gene - From: IUPHAR and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(<i>R</i>)-alpha-methylhistamine
Full agonist, Agonist
(<i>S</i>)-alpha-methylhistamine
Full agonist, Agonist
[<sup>3</sup>H](<i>R</i>)-alpha-methylhistamine
Full agonist, Agonist
<i>N</i>-alpha-methylhistamine
Full agonist, Agonist

(5) Tocris Compounds for HRH4 Gene

Compound Action Cas Number
4-Methylhistamine dihydrochloride Selective, high affinity H4 agonist 36376-47-3
A 987306 Potent and selective H4 receptor antagonist 1082954-71-9
JNJ 10191584 maleate Selective H4 receptor antagonist; orally active 869497-75-6
VUF 10460 Selective H4 agonist 1028327-66-3
VUF 8430 dihydrobromide Potent, high affinity H4 agonist 100130-32-3
genes like me logo Genes that share compounds with HRH4: view

Transcripts for HRH4 Gene

mRNA/cDNA for HRH4 Gene

(3) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HRH4 Gene

Histamine receptor H4:
Representative Sequences:

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HRH4

Clone Products

  • Addgene plasmids for HRH4

Alternative Splicing Database (ASD) splice patterns (SP) for HRH4 Gene

No ASD Table

Relevant External Links for HRH4 Gene

GeneLoc Exon Structure for
HRH4
ECgene alternative splicing isoforms for
HRH4

Expression for HRH4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HRH4 Gene

mRNA differential expression in normal tissues according to GTEx for HRH4 Gene

This gene is overexpressed in Whole Blood (x12.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for HRH4 Gene



NURSA nuclear receptor signaling pathways regulating expression of HRH4 Gene:

HRH4

SOURCE GeneReport for Unigene cluster for HRH4 Gene:

Hs.287388

mRNA Expression by UniProt/SwissProt for HRH4 Gene:

Q9H3N8-HRH4_HUMAN
Tissue specificity: Expressed primarily in the bone marrow and eosinophils. Shows preferential distribution in cells of immunological relevance such as T-cells, dendritic cells, monocytes, mast cells, neutrophils. Also expressed in a wide variety of peripheral tissues, including the heart, kidney, liver, lung, pancreas, skeletal muscle, prostate, small intestine, spleen, testis, colon, fetal liver and lymph node.

Evidence on tissue expression from TISSUES for HRH4 Gene

  • Blood(4.4)
  • Bone marrow(4.3)
genes like me logo Genes that share expression patterns with HRH4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for HRH4 Gene

Orthologs for HRH4 Gene

This gene was present in the common ancestor of animals.

Orthologs for HRH4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HRH4 34 33
  • 99.23 (n)
OneToOne
dog
(Canis familiaris)
Mammalia HRH4 34 33
  • 82.09 (n)
OneToOne
cow
(Bos Taurus)
Mammalia HRH4 34 33
  • 78.15 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Hrh4 16 34 33
  • 75.66 (n)
rat
(Rattus norvegicus)
Mammalia Hrh4 33
  • 74.81 (n)
oppossum
(Monodelphis domestica)
Mammalia HRH4 34
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HRH4 34
  • 41 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 34
  • 52 (a)
OneToMany
-- 34
  • 35 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 34 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii CABZ01078515.1 34
  • 37 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG7918 34
  • 10 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea gar-2 34
  • 13 (a)
ManyToMany
gar-1 34
  • 13 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 17 (a)
ManyToMany
-- 34
  • 17 (a)
ManyToMany
Species where no ortholog for HRH4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for HRH4 Gene

ENSEMBL:
Gene Tree for HRH4 (if available)
TreeFam:
Gene Tree for HRH4 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for HRH4: view image

Paralogs for HRH4 Gene

Paralogs for HRH4 Gene

(2) SIMAP similar genes for HRH4 Gene using alignment to 1 proteins:

  • HRH4_HUMAN
genes like me logo Genes that share paralogs with HRH4: view

Variants for HRH4 Gene

Sequence variations from dbSNP and Humsavar for HRH4 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000107188 -- 24,480,185(+) A/G downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000406244 -- 24,481,112(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000473676 -- 24,474,477(+) C/T intron_variant
rs1000519267 -- 24,478,234(+) G/T 3_prime_UTR_variant, intron_variant
rs1000562455 -- 24,479,752(+) C/T 3_prime_UTR_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HRH4 Gene

Variant ID Type Subtype PubMed ID
esv2716869 CNV deletion 23290073
nsv521369 CNV gain 19592680

Variation tolerance for HRH4 Gene

Residual Variation Intolerance Score: 52.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.51; 71.90% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for HRH4 Gene

Human Gene Mutation Database (HGMD)
HRH4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
HRH4

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HRH4 Gene

Disorders for HRH4 Gene

MalaCards: The human disease database

(4) MalaCards diseases for HRH4 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search HRH4 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HRH4

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with HRH4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HRH4 Gene

Publications for HRH4 Gene

  1. Molecular cloning and characterization of a new human histamine receptor, HH4R. (PMID: 11118334) Nakamura T … Tanaka K (Biochemical and biophysical research communications 2000) 2 3 4 22 58
  2. Polymorphisms in human histamine receptor H4 gene are associated with atopic dermatitis. (PMID: 20199554) Yu B … Wan J (The British journal of dermatology 2010) 3 22 44 58
  3. Cloning and characterization of dominant negative splice variants of the human histamine H4 receptor. (PMID: 18452403) van Rijn RM … Leurs R (The Biochemical journal 2008) 3 4 22 58
  4. Cloning and pharmacological characterization of a fourth histamine receptor (H(4)) expressed in bone marrow. (PMID: 11179434) Liu C … Lovenberg TW (Molecular pharmacology 2001) 3 4 22 58
  5. Cloning, expression, and pharmacological characterization of a novel human histamine receptor. (PMID: 11179436) Zhu Y … Fitzgerald LR (Molecular pharmacology 2001) 3 4 22 58

Products for HRH4 Gene

Sources for HRH4 Gene

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