Aliases for HPN-AS1 Gene

Subcategory (RNA class) for HPN-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for HPN-AS1 Gene

  • HPN Antisense RNA 1 2 3 5
  • HPN-AS1 2 5 165
  • NONHSAG025555.2 91
  • CTD-2527I21.11 3

External Ids for HPN-AS1 Gene

Previous GeneCards Identifiers for HPN-AS1 Gene

  • GC19M036560
  • GC19M037093
  • GC19M035059
  • GC19M039188
  • GC19M041403

Summaries for HPN-AS1 Gene

GeneCards Summary for HPN-AS1 Gene

HPN-AS1 (HPN Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HPN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HPN-AS1 Gene

Genomics for HPN-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HPN-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HPN-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HPN-AS1 Gene

Genomic Locations for HPN-AS1 Gene
chr19:35,042,902-35,106,307
(GRCh38/hg38)
Size:
63,406 bases
Orientation:
Minus strand
chr19:35,549,963-35,597,208
(GRCh37/hg19)
Size:
47,246 bases
Orientation:
Minus strand

Genomic View for HPN-AS1 Gene

Genes around HPN-AS1 on UCSC Golden Path with GeneCards custom track
HPN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HPN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPN-AS1 Gene

Proteins for HPN-AS1 Gene

Post-translational modifications for HPN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPN-AS1 Gene

Domains & Families for HPN-AS1 Gene

Gene Families for HPN-AS1 Gene

genes like me logo Genes that share domains with HPN-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HPN-AS1 Gene

Function for HPN-AS1 Gene

Phenotypes From GWAS Catalog for HPN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPN-AS1 Gene

Localization for HPN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPN-AS1 Gene

Pathways & Interactions for HPN-AS1 Gene

PathCards logo

SuperPathways for HPN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HPN-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HPN-AS1 Gene

Drugs & Compounds for HPN-AS1 Gene

No Compound Related Data Available

Transcripts for HPN-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HPN-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C3F8_9606 lncRNA 3681 4

HGNC: 47041,

RefSeq: NR_024561,

LNCipedia: HPN-AS1:2,

NONCODE: NONHSAT065797.2,

URS00000D7FB8_9606 lncRNA 1124 4

RefSeq: NR_024562,

Ensembl: ENST00000392227 (view in UCSC) ,

LNCipedia: HPN-AS1:1,

NONCODE: NONHSAT065795.2,

URS0000EF0155_9606 lncRNA 3318 1

Ensembl: ENST00000653822 (view in UCSC) ,

URS0000EF35BE_9606 lncRNA 3218 1

Ensembl: ENST00000666194 (view in UCSC) ,

URS0000EF20B7_9606 lncRNA 1427 1

Ensembl: ENST00000668923 (view in UCSC) ,

HPN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HPN-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HPN-AS1 Gene

No ASD Table

Relevant External Links for HPN-AS1 Gene

GeneLoc Exon Structure for
HPN-AS1

Expression for HPN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HPN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HPN-AS1 Gene

This gene is overexpressed in Liver (x22.6), Pancreas (x8.3), and Kidney - Cortex (x6.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HPN-AS1

genes like me logo Genes that share expression patterns with HPN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPN-AS1 Gene

Orthologs for HPN-AS1 Gene

Evolution for HPN-AS1 Gene

ENSEMBL:
Gene Tree for HPN-AS1 (if available)
TreeFam:
Gene Tree for HPN-AS1 (if available)

No data available for Orthologs for HPN-AS1 Gene

Paralogs for HPN-AS1 Gene

No data available for Paralogs for HPN-AS1 Gene

Variants for HPN-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HPN-AS1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
781466 Benign: not provided 35,059,800(-) C/G SYNONYMOUS_VARIANT
787571 Benign: not provided 35,060,720(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for HPN-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HPN-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1772n106 CNV insertion 24896259
esv1320761 CNV insertion 17803354
nsv1129392 OTHER inversion 24896259
nsv1131424 CNV deletion 24896259
nsv1142937 CNV tandem duplication 24896259
nsv1149059 CNV deletion 26484159
nsv525108 CNV loss 19592680

Additional Variant Information for HPN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPN-AS1 Gene

Disorders for HPN-AS1 Gene

No disorders were found for HPN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPN-AS1 Gene

Publications for HPN-AS1 Gene

  1. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N … Morris AP (American journal of human genetics 2012) 3
  2. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K … National Institute of Allergy and Infectious Diseases Center for HIV/AIDS Vaccine Immunology (CHAVI) (The Journal of infectious diseases 2010) 3

Products for HPN-AS1 Gene

Sources for HPN-AS1 Gene