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Aliases for HPN-AS1 Gene

Subcategory (RNA class) for HPN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HPN-AS1 Gene

  • HPN Antisense RNA 1 2 3 5
  • CTD-2527I21.11 3

External Ids for HPN-AS1 Gene

Previous GeneCards Identifiers for HPN-AS1 Gene

  • GC19M036560
  • GC19M037093

Summaries for HPN-AS1 Gene

GeneCards Summary for HPN-AS1 Gene

HPN-AS1 (HPN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HPN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPN-AS1 Gene

Genomics for HPN-AS1 Gene

GeneHancer (GH) Regulatory Elements for HPN-AS1 Gene

Promoters and enhancers for HPN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I035106 Enhancer 1.2 Ensembl ENCODE dbSUPER 560.5 -1.1 -1140 1.3 ELF3 PKNOX1 ARID4B BATF DNMT3B THRB RARA EGR1 IKZF2 THAP11 HPN-AS1 ENSG00000179066 LGI4 FXYD3
GH19I035104 Enhancer 0.6 FANTOM5 dbSUPER 550.8 +1.5 1450 0.4 ATF4 CEBPB HPN-AS1 ENSG00000179066 ZNF30 ZNF181 LOC100420797
GH19I035136 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 12 -33.2 -33154 5.4 HDGF FOXA2 MLX ARID4B SIN3A YBX1 ZNF2 YY1 ZNF143 ZNF548 ENSG00000221857 FXYD1 ENSG00000279619 ZNF599 TMEM147-AS1 LSM14A HAUS5 KIAA0355 ZNF792 KMT2B
GH19I034972 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +132.2 132242 2.5 HDGF PKNOX1 ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 ZNF302 ZNF416 TMEM147-AS1 ZNF599 HAUS5 ZNF181 ENSG00000267049 PROSER3 LSM14A KMT2B KIAA0355 ZNF30
GH19I035328 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.3 -224.7 -224731 5.1 HDGF PKNOX1 SMAD1 RB1 BMI1 KLF5 IRF4 TCF12 ZNF207 ATF7 CD22 ENSG00000269553 MAG KRTDAP DMKN HAMP ENSG00000233214 FAM187B TMEM147-AS1 TMEM147
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HPN-AS1 Gene

Genomic Locations for HPN-AS1 Gene
chr19:35,059,059-35,106,304
(GRCh38/hg38)
Size:
47,246 bases
Orientation:
Minus strand
chr19:35,549,963-35,597,208
(GRCh37/hg19)

Genomic View for HPN-AS1 Gene

Genes around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPN-AS1 Gene

Proteins for HPN-AS1 Gene

Post-translational modifications for HPN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPN-AS1 Gene

Domains & Families for HPN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPN-AS1 Gene

Function for HPN-AS1 Gene

Phenotypes From GWAS Catalog for HPN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPN-AS1 Gene

Localization for HPN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPN-AS1 Gene

Pathways & Interactions for HPN-AS1 Gene

SuperPathways for HPN-AS1 Gene

No Data Available

Interacting Proteins for HPN-AS1 Gene

Gene Ontology (GO) - Biological Process for HPN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HPN-AS1 Gene

Drugs & Compounds for HPN-AS1 Gene

No Compound Related Data Available

Transcripts for HPN-AS1 Gene

mRNA/cDNA for HPN-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HPN-AS1 Gene

No ASD Table

Relevant External Links for HPN-AS1 Gene

GeneLoc Exon Structure for
HPN-AS1
ECgene alternative splicing isoforms for
HPN-AS1

Expression for HPN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HPN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HPN-AS1 Gene

This gene is overexpressed in Liver (x22.6), Pancreas (x8.3), and Kidney - Cortex (x6.5).
genes like me logo Genes that share expression patterns with HPN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPN-AS1 Gene

Orthologs for HPN-AS1 Gene

Evolution for HPN-AS1 Gene

ENSEMBL:
Gene Tree for HPN-AS1 (if available)
TreeFam:
Gene Tree for HPN-AS1 (if available)

No data available for Orthologs for HPN-AS1 Gene

Paralogs for HPN-AS1 Gene

No data available for Paralogs for HPN-AS1 Gene

Variants for HPN-AS1 Gene

Sequence variations from dbSNP and Humsavar for HPN-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000038940 -- 35,085,066(-) G/A intron_variant
rs1000066404 -- 35,079,221(-) C/T intron_variant
rs1000069314 -- 35,078,805(-) C/A intron_variant
rs1000155636 -- 35,100,440(-) A/T intron_variant
rs1000218499 -- 35,063,143(-) A/C genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HPN-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1772n106 CNV insertion 24896259
esv1320761 CNV insertion 17803354
nsv1129392 OTHER inversion 24896259
nsv1131424 CNV deletion 24896259
nsv1142937 CNV tandem duplication 24896259
nsv1149059 CNV deletion 26484159
nsv525108 CNV loss 19592680

Additional Variant Information for HPN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPN-AS1 Gene

Disorders for HPN-AS1 Gene

Additional Disease Information for HPN-AS1

No disorders were found for HPN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPN-AS1 Gene

Publications for HPN-AS1 Gene

  1. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N … Morris AP (American journal of human genetics 2012) 3 58
  2. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K … National Institute of Allergy and Infectious Diseases Center for HIV/AIDS Vaccine Immunology (CHAVI) (The Journal of infectious diseases 2010) 3 58

Products for HPN-AS1 Gene

Sources for HPN-AS1 Gene

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