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Aliases for HPF1 Gene
Aliases for HPF1 Gene
External Ids for HPF1 Gene
- HGNC: 26051
- Entrez Gene: 54969
- Ensembl: ENSG00000056050
- OMIM: 616614
- UniProtKB: Q9NWY4
Previous HGNC Symbols for HPF1 Gene
- C4orf27
Summaries for HPF1 Gene
GeneCards Summary for HPF1 Gene
HPF1 (Histone PARylation Factor 1) is a Protein Coding gene.
UniProtKB/Swiss-Prot Summary for HPF1 Gene
-
Acts as a cofactor for serine ADP-ribosylation by conferring serine specificity on PARP1 and PARP2: interacts with PARP1 and PARP2 and is able to change amino acid specificity toward serine (PubMed:28190768, PubMed:29480802). Promotes histone serine ADP-ribosylation in response to DNA damage, limiting DNA damage-induced PARP1 hyper-automodification, and ensuring genome stability (PubMed:27067600, PubMed:28190768). Serine ADP-ribosylation of proteins constitutes the primary form of ADP-ribosylation of proteins in response to DNA damage (PubMed:29480802). HPF1 also promotes tyrosine ADP-ribosylation, probably by conferring tyrosine specificity on PARP1 (PubMed:30257210).
Additional gene information for HPF1 Gene
- HGNC(26051)
- Entrez Gene(54969)
- Ensembl(ENSG00000056050)
- OMIM(616614)
- UniProtKB(Q9NWY4)
- Open Targets Platform(ENSG00000056050)
- Search for HPF1 at DataMed
- Search for HPF1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HPF1 Gene
Genomics for HPF1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for HPF1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J169756 | Promoter/Enhancer | 2 | EPDnew Ensembl ENCODE CraniofacialAtlas | 614.9 | +0.4 | 444 | 2.6 | SP1 TEAD4 PRDM10 LEF1 IKZF1 LARP7 ZIC2 RBFOX2 POLR2A RXRB | HPF1 LOC107986240 lnc-NEK1-2 CLCN3 MG828730-051 | |
| GH04J169759 | Enhancer | 0.2 | Ensembl | 600.7 | -2.0 | -1957 | 0.2 | HPF1 LOC107986240 lnc-HPF1-2 MG828730-051 MFAP3L | ||
| GH04J169266 | Promoter/Enhancer | 2.3 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 10.5 | +488.0 | 488046 | 6.2 | PRDM10 ZNF692 POLR2A BACH1 FOXA1 LARP7 ZNF143 RBFOX2 PATZ1 TCF12 | SH3RF1 HSALNG0038468 HPF1 ENSG00000251171 CBR4 | |
| GH04J168814 | Enhancer | 1.4 | FANTOM5 ENCODE CraniofacialAtlas dbSUPER | 11.1 | +941.4 | 941390 | 3.6 | HNRNPL CREB1 TEAD4 ZNF629 ZNF692 FOXA1 ZNF776 ZSCAN4 PATZ1 SP1 | HPF1 piR-50444-355 piR-33807 CBR4 DDX60L PALLD | |
| GH04J169745 | Enhancer | 0.2 | Ensembl | 17.1 | +12.6 | 12643 | 1 | HPF1 lnc-NEK1-2 CLCN3 MG828730-051 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HPF1 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for HPF1
Genomic Locations for HPF1 Gene
Genomic Locations for HPF1 Gene
- chr4:169,729,470-169,757,944
- (GRCh38/hg38)
- Size:
- 28,475 bases
- Orientation:
- Minus strand
- chr4:170,650,616-170,679,104
- (GRCh37/hg19)
- Size:
- 28,489 bases
- Orientation:
- Minus strand
Genomic View for HPF1 Gene
Genes around HPF1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q33 by HGNC
- 4q33 by Entrez Gene
- 4q33 by Ensembl
HPF1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HPF1 Gene
Proteins for HPF1 Gene
-
Protein details for HPF1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NWY4-HPF1_HUMAN
- Recommended name:
- Histone PARylation factor 1
- Protein Accession:
- Q9NWY4
Protein attributes for HPF1 Gene
- Size:
- 346 amino acids
- Molecular mass:
- 39436 Da
- Quaternary structure:
-
- Interacts with PARP1 (via the PARP catalytic domain) (PubMed:27067600). Interacts with histone H2A and histone H3 in a PARP1-dependent manner (PubMed:27067600). Weakly interacts with PARP2 (via the PARP catalytic domain) (PubMed:27067600).
Post-translational modifications for HPF1 Gene
Other Protein References for HPF1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for HPF1
- Novus Biologicals Antibodies for HPF1
- antibodies-online: Show 8 available C4ORF27 Antibodies ranked by validation data
Protein Products
-
OriGene Purified Proteins for HPF1
- Search Origene for MassSpec and Protein Over-expression Lysates for HPF1
- Origene Custom Protein Services for HPF1
-
Signalway Proteins for HPF1
No data available for DME Specific Peptides for HPF1 Gene
Domains & Families for HPF1 Gene
Gene Families for HPF1 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Suggested Antigen Peptide Sequences for HPF1 Gene
- GenScript: Design optimal peptide antigens:
-
- UPF0609 protein C4orf27 (CD027_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q9NWY4- Family:
-
- Belongs to the HPF1 family.
Function for HPF1 Gene
Molecular function for HPF1 Gene
- UniProtKB/Swiss-Prot Function:
- Acts as a cofactor for serine ADP-ribosylation by conferring serine specificity on PARP1 and PARP2: interacts with PARP1 and PARP2 and is able to change amino acid specificity toward serine (PubMed:28190768, PubMed:29480802). Promotes histone serine ADP-ribosylation in response to DNA damage, limiting DNA damage-induced PARP1 hyper-automodification, and ensuring genome stability (PubMed:27067600, PubMed:28190768). Serine ADP-ribosylation of proteins constitutes the primary form of ADP-ribosylation of proteins in response to DNA damage (PubMed:29480802). HPF1 also promotes tyrosine ADP-ribosylation, probably by conferring tyrosine specificity on PARP1 (PubMed:30257210).
Phenotypes From GWAS Catalog for HPF1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 27067600 |
| GO:0008270 | zinc ion binding | IBA | 21873635 |
| GO:0042393 | histone binding | IDA | 27067600 |
| GO:0072572 | poly-ADP-D-ribose binding | IBA | 21873635 |
Phenotypes for HPF1 Gene
- MGI mutant phenotypes for HPF1:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for HPF1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HPF1 - Select products 50% OFF >
- * HPF1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
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-
OriGene CRISPR knockouts for HPF1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HPF1
miRNA for HPF1 Gene
- miRTarBase miRNAs that target HPF1
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HPF1
- Browse OriGene Inhibitory RNA Products For HPF1
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Clone Products
- Applied Biological Materials (abm): Clones for HPF1 - Select products 50% OFF >
- * HPF1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for HPF1
- Addgene plasmids for HPF1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HPF1
Cell Line Products
-
Horizon Cell Lines for HPF1
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HPF1 Gene
Localization for HPF1 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 4 |
| cytosol | 3 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
- Cytokinetic bridge (2)
- Cytosol (2)
- Microtubules (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IDA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for HPF1 Gene
Pathways & Interactions for HPF1 Gene
Interacting Proteins for HPF1 Gene
GPS-Prot Interaction Network for HPF1
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | IBA,IMP | 27067600 |
| GO:0010835 | regulation of protein ADP-ribosylation | IBA,IMP | 27067600 |
| GO:0018312 | peptidyl-serine ADP-ribosylation | IBA,IMP | 29480802 |
No data available for Pathways by source and SIGNOR curated interactions for HPF1 Gene
Transcripts for HPF1 Gene
mRNA/cDNA for HPF1 Gene
- 1 REFSEQ mRNAs :
- 8 NCBI additional mRNA sequence :
- 3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000393381 1216 nts (view in UCSC)
- ENST00000506125 489 nts (view in UCSC)
- ENST00000515204 548 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HPF1 - Select products 50% OFF >
- * HPF1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for HPF1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HPF1
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HPF1
- Browse OriGene Inhibitory RNA Products For HPF1
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HPF1
Clone Products
- Applied Biological Materials (abm): Clones for HPF1 - Select products 50% OFF >
- * HPF1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for HPF1
- Addgene plasmids for HPF1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HPF1
Relevant External Links for HPF1 Gene
- GeneLoc Exon Structure for
- HPF1
Expression for HPF1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HPF1
Evidence on tissue expression from TISSUES for HPF1 Gene
- Skin(4.3)
- Nervous system(4.3)
No Expression Related Data Available
Primer Products
-
OriGene qPCR primer pairs for HPF1
-
OriGene qPCR primer pairs and template standards for HPF1
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPF1 Gene
Orthologs for HPF1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | C4H4orf27 30 |
|
||
| C4orf27 31 |
|
OneToOne | |||
| Dog (Canis familiaris) |
Mammalia | C4ORF27 31 |
|
OneToOne | |
| C25H4orf27 30 |
|
||||
| Mouse (Mus musculus) |
Mammalia | 2700029M09Rik 30 31 |
|
OneToOne | |
| Hpf1 17 |
|
||||
| Rat (Rattus norvegicus) |
Mammalia | RGD1311747 30 |
|
||
| Cow (Bos Taurus) |
Mammalia | C8H4orf27 30 |
|
||
| C4orf27 31 |
|
OneToOne | |||
| Platypus (Ornithorhynchus anatinus) |
Mammalia | C4orf27 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | C4orf27 31 |
|
OneToOne | |
| Chicken (Gallus gallus) |
Aves | C4H4ORF27 30 |
|
||
| C4orf27 31 |
|
OneToOne | |||
| Lizard (Anolis carolinensis) |
Reptilia | C4orf27 31 |
|
OneToOne | |
| Tropical Clawed Frog (Silurana tropicalis) |
Amphibia | LOC100488348 30 |
|
||
| Zebrafish (Danio rerio) |
Actinopterygii | zgc:101819 30 |
|
||
| C1H4orf27 31 |
|
OneToOne | |||
| wufb44b08 30 |
|
||||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP010317 30 |
|
||
| Fruit Fly (Drosophila melanogaster) |
Insecta | CG1218 30 31 |
|
OneToOne | |
| Sea Squirt (Ciona savignyi) |
Ascidiacea | -- 31 |
|
OneToOne | |
| Sea Vase (Ciona intestinalis) |
Ascidiacea | Cin.13723 30 |
|
- Species where no ortholog for HPF1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for HPF1 Gene
Pseudogenes.org Pseudogenes for HPF1 Gene
No data available for Paralogs for HPF1 Gene
Variants for HPF1 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3351919 | CNV | insertion | 20981092 |
| esv3603125 | CNV | loss | 21293372 |
| nsv964113 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
62.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.56;
30.12% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for HPF1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HPF1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HPF1 Gene
Disorders for HPF1 Gene
Additional Disease Information for HPF1
No disorders were found for HPF1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPF1 Gene
Publications for HPF1 Gene
- HPF1/C4orf27 Is a PARP-1-Interacting Protein that Regulates PARP-1 ADP-Ribosylation Activity. (PMID: 27067600) Gibbs-Seymour I … Ahel I (Molecular cell 2016) 2 3 4
- Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S … Poustka A (Genome research 2001) 2 3 4
- Serine is the major residue for ADP-ribosylation upon DNA damage. (PMID: 29480802) Palazzo L … Ahel I (eLife 2018) 3 4
- Serine ADP-Ribosylation Depends on HPF1. (PMID: 28190768) Bonfiglio JJ … Matic I (Molecular cell 2017) 3 4
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
ExternalLinks
Products for HPF1 Gene
- Custom Antibody ServicesOriGene Antibodies for HPF1
- Browse OriGene ELISA Kits
- Custom Assay Services
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- Browse OriGene Inhibitory RNA Products For HPF1
- OriGene qPCR primer pairs for HPF1
- OriGene qPCR primer pairs and template standards for HPF1
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- Sino Biological Human cDNA Clone for HPF1
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- High-throughput Antibody Production Service
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- Epitope Tag Antibodies & Reporter Protein Antibodies
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- Novus Biologicals proteins and lysates for HPF1
- Browse Antibodies
- Browse Peptides and Proteins
- Browse Lysates
- Browse ELISA Kits
- VectorBuilder Custom and pre-made DNA vectors for HPF1 (ie. gene expression, shRNA knockdown, CRISPR)
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- VectorBuilder Stable cell line generation for HPF1
- Addgene plasmids for HPF1
- antibodies-online: Show 8 available C4ORF27 Antibodies ranked by validation data
- antibodies-online: Search results for available C4ORF27 related products ranked by validation data
- antibodies-online: Search results for available C4ORF27 related products ranked by validation data
- Horizon Cell Lines for HPF1
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- Search GeneCopoeia for miRNA 3'UTR Target clone products for HPF1
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- Signalway Proteins for HPF1
Sources for HPF1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
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- (32) euGenes
- (33) SGD
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- (35) WormBase
- (36) Pseudogene
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- (38) dbSNP
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- (44) Atlas
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- (67) Reactome
- (68) GeneGo (Thomson Reuters)
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- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
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- (83) Illumina
- (84) COMPARTMENTS
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- (89) antibodies-online
- (90) CYP
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- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
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- (104) diseasecard
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- (135) abm
- (136) Human Protein Atlas
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