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Aliases for HP09053 Gene

Subcategory (RNA class) for HP09053 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for HP09053 Gene

  • Uncharacterized LOC101929357 3

External Ids for HP09053 Gene

Previous GeneCards Identifiers for HP09053 Gene

  • GC03U902112

Summaries for HP09053 Gene

GeneCards Summary for HP09053 Gene

HP09053 (Uncharacterized LOC101929357) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for HP09053 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP09053 Gene

Genomics for HP09053 Gene

GeneHancer (GH) Regulatory Elements for HP09053 Gene

Promoters and enhancers for HP09053 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I099824 Enhancer 1 Ensembl ENCODE 550.8 -1.5 -1488 1.7 HDAC1 PKNOX1 TCF12 ZNF366 FOS ZEB2 PRDM6 MTA1 SMARCA4 GMEB1 HP09053 FILIP1L TBC1D23 TOMM70 CMSS1 PIR39775
GH03I099816 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +6.0 5961 2.2 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CMSS1 FILIP1L HP09053
GH03I099832 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -9.3 -9264 1.3 CTCF ZNF362 HLF FEZF1 ZNF2 ZNF843 BCL11B CHAMP1 ZBTB33 FILIP1L HP09053 CMSS1 PIR39775
GH03I099833 Enhancer 0.9 Ensembl ENCODE 0.4 -8.3 -8336 0.4 CTCF PKNOX1 ZNF654 ZNF362 SOX6 TRIM22 ZNF384 ZNF2 RAD21 ATF2 HP09053 CMSS1 PIR39775 FILIP1L
GH03I099845 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -22.8 -22755 2 FOXA2 RAD21 YY1 TCF12 FOS ETV6 PAF1 CEBPB REST NFIL3 FILIP1L TBC1D23 PIR39775 HP09053 CMSS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HP09053 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HP09053 Gene

Genomic Locations for HP09053 Gene
chr3:99,816,632-99,823,865
(GRCh38/hg38)
Size:
7,234 bases
Orientation:
Minus strand

Genomic View for HP09053 Gene

Genes around HP09053 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HP09053 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HP09053 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HP09053 Gene

Proteins for HP09053 Gene

Post-translational modifications for HP09053 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HP09053 Gene

Domains & Families for HP09053 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HP09053 Gene

Function for HP09053 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HP09053 Gene

Localization for HP09053 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HP09053 Gene

Pathways & Interactions for HP09053 Gene

SuperPathways for HP09053 Gene

No Data Available

Interacting Proteins for HP09053 Gene

Gene Ontology (GO) - Biological Process for HP09053 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HP09053 Gene

Drugs & Compounds for HP09053 Gene

No Compound Related Data Available

Transcripts for HP09053 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HP09053 Gene

No ASD Table

Relevant External Links for HP09053 Gene

GeneLoc Exon Structure for
HP09053

No data available for mRNA/cDNA for HP09053 Gene

Expression for HP09053 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HP09053 Gene

Orthologs for HP09053 Gene

No data available for Orthologs and Evolution for HP09053 Gene

Paralogs for HP09053 Gene

No data available for Paralogs for HP09053 Gene

Variants for HP09053 Gene

Sequence variations from dbSNP and Humsavar for HP09053 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000270768 -- 99,823,454(-) A/G intron_variant
rs1000829553 -- 99,820,174(-) C/G/T intron_variant
rs1001008261 -- 99,824,913(-) T/C upstream_transcript_variant
rs1001186344 -- 99,816,997(-) A/G non_coding_transcript_variant
rs1001281132 -- 99,818,491(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for HP09053 Gene

Disorders for HP09053 Gene

Additional Disease Information for HP09053

No disorders were found for HP09053 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HP09053 Gene

Publications for HP09053 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 58

Products for HP09053 Gene

Sources for HP09053 Gene

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