Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3 5
  • HOXC13-AS 2 5 165
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • NONHSAG011262.2 91
  • HSALNG0091316 164
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HOXC13-AS include Diffuse Lipomatosis and Ectodermal Dysplasia 9, Hair/Nail Type.

Additional gene information for HOXC13-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HOXC13-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053938 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 609 -0.4 -358 4.4 CEBPG CREB1 PRDM10 ZNF629 ZNF512 LEF1 ZNF692 DDX20 ZIC2 PKNOX1 HOXC13-AS HOXC13 HNRNPA1 ZNF740 AAAS ATF7 ENSG00000258344 CSAD CBX5 PFDN5
GH12J053971 Promoter/Enhancer 2.7 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.7 -63.7 -63669 63 ZNF221 RNF2 CREB1 GATAD2A CTCF ZBTB33 HNRNPL TEAD4 PRDM10 ZNF629 HOTAIR HOXC8 HOXC-AS1 HOXC11 HOXC4 HOXC9 HOXC6 HOXC10 HOXC5 HNRNPA1
GH12J053962 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 11.8 -27.0 -27035 7.5 RNF2 PRDM10 ZNF629 ZNF512 ZNF692 PRDM1 ZIC2 PATZ1 ZNF501 EZH2 HOTAIR ENSG00000277129 ENSG00000277994 ENSG00000274817 HOXC11 MAP3K12 HOXC6 MIR196A2 HOXC5 HOXC13
GH12J054051 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 10.4 -113.9 -113874 4.8 RNF2 ATF7 PRDM10 ZNF629 ZNF692 LARP7 PRDM1 ZNF143 ZIC2 ZSCAN4 HOXC4 AAAS ATF7 RARG HNRNPA1 ENSG00000260470 PCBP2 HOTAIR SP1 IGFBP6
GH12J053844 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.9 +94.4 94442 4.4 TEAD4 FOXA1 SCRT2 SP1 SMARCC1 BRF2 CEBPB FOS JUN RCOR1 EIF4B HOXC13 HOXC13-AS HOXC6 HOXC4 HOXC5 MIR615 CALCOCO1 FLJ12825 ENSG00000250654
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXC13-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HOXC13-AS Gene

Genomic Locations for HOXC13-AS Gene
chr12:53,935,328-53,939,643
(GRCh38/hg38)
Size:
4,316 bases
Orientation:
Minus strand
chr12:54,329,112-54,333,427
(GRCh37/hg19)
Size:
4,316 bases
Orientation:
Minus strand

Genomic View for HOXC13-AS Gene

Genes around HOXC13-AS on UCSC Golden Path with GeneCards custom track
HOXC13-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HOXC13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains & Families for HOXC13-AS Gene

Gene Families for HOXC13-AS Gene

genes like me logo Genes that share domains with HOXC13-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

Phenotypes From GWAS Catalog for HOXC13-AS Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXC13-AS gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways & Interactions for HOXC13-AS Gene

PathCards logo

SuperPathways for HOXC13-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXC13-AS Gene

Drugs & Compounds for HOXC13-AS Gene

No Compound Related Data Available

Transcripts for HOXC13-AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HOXC13-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003A116B_9606 lncRNA 1408 6

HGNC: 43753,

RefSeq: NR_047507,

Ensembl: ENST00000512916 (view in UCSC) ,

LncBook: HSALNT0189443,

LNCipedia: HOXC13-AS:1,

NONCODE: NONHSAT028503.2,

HOXC13-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HOXC13-AS Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
HOXC13-AS

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.2) and Skin - Not Sun Exposed (Suprapubic) (x21.2).
genes like me logo Genes that share expression patterns with HOXC13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

ENSEMBL:
Gene Tree for HOXC13-AS (if available)
TreeFam:
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HOXC13-AS Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs398122377 Pathogenic: Ectodermal dysplasia 9, hair/nail type 53,939,258(-) AC/A FRAMESHIFT_VARIANT
rs398122913 Pathogenic: Ectodermal dysplasia 9, hair/nail type 53,939,296(-) C/A NONSENSE

Additional dbSNP identifiers (rs#s) for HOXC13-AS Gene

Structural Variations from Database of Genomic Variants (DGV) for HOXC13-AS Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138

Additional Variant Information for HOXC13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

MalaCards: The human disease database

(3) MalaCards diseases for HOXC13-AS Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with HOXC13-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. LINC00958 and HOXC13-AS as key candidate biomarkers in head and neck squamous cell carcinoma by integrated bioinformatics analysis. (PMID: 32095369) Xiong D … Zhang X (PeerJ 2020) 2 3
  2. HOXC13-AS promotes breast cancer cell growth through regulating miR-497-5p/PTEN axis. (PMID: 31066051) Li X … Ding Y (Journal of cellular physiology 2019) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene