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Aliases for HOXC-AS1 Gene

Subcategory (RNA class) for HOXC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS1 Gene

  • HOXC Cluster Antisense RNA 1 2 3 5
  • HOXC Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXC-AS1 Gene

Previous GeneCards Identifiers for HOXC-AS1 Gene

  • GC12M054393

Summaries for HOXC-AS1 Gene

GeneCards Summary for HOXC-AS1 Gene

HOXC-AS1 (HOXC Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS1 Gene

Genomics for HOXC-AS1 Gene

GeneHancer (GH) Regulatory Elements for HOXC-AS1 Gene

Promoters and enhancers for HOXC-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I053971 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.1 +9.8 9767 36.8 FEZF1 DMAP1 IRF4 ZNF213 ZNF416 ZNF143 ZNF548 SP3 NFYC ZNF610 HOXC11 HOXC9 HOXC6 HOXC10 GC12P054010 GC12P054044 MIR196A2 HNRNPA1 ZNF740 ENSG00000258344
GH12I054009 Promoter/Enhancer 3.2 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.9 -22.1 -22086 25.8 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 POLR2B CBX5 ZNF213 HOXC4 HOXC6 HOXC5 GC12P054071 GC12P054093 PIR46464 PIR59725 PIR59985 PIR53546 AAAS
GH12I054188 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.1 -188.8 -188803 1.6 PKNOX1 ARNT ARID4B SIN3A ETS1 ZNF766 GLIS2 ZNF213 E2F8 ELK1 LOC105369777 SMUG1 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 ENSG00000257605 MIR615
GH12I054051 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11 -53.5 -53507 4.8 HDGF PKNOX1 SMAD1 ARNT FEZF1 ZNF2 ZNF213 ZNF143 SP3 JUNB HOXC4 AAAS ATF7 RARG HNRNPA1 ENSG00000260470 PCBP2 HOTAIR SP1 IGFBP6
GH12I054195 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.6 -196.7 -196666 3.1 HDGF PKNOX1 KLF17 ZNF335 ZNF121 GLIS2 ZNF366 SMARCC2 KLF7 FOS HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 LOC102724030
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXC-AS1 Gene

Genomic Locations for HOXC-AS1 Gene
chr12:53,999,022-54,000,010
(GRCh38/hg38)
Size:
989 bases
Orientation:
Minus strand
chr12:54,392,806-54,393,794
(GRCh37/hg19)

Genomic View for HOXC-AS1 Gene

Genes around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS1 Gene

Proteins for HOXC-AS1 Gene

Post-translational modifications for HOXC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS1 Gene

Domains & Families for HOXC-AS1 Gene

Gene Families for HOXC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXC-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS1 Gene

Function for HOXC-AS1 Gene

Phenotypes From GWAS Catalog for HOXC-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS1 Gene

Localization for HOXC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXC-AS1 Gene

Pathways & Interactions for HOXC-AS1 Gene

SuperPathways for HOXC-AS1 Gene

No Data Available

Interacting Proteins for HOXC-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS1 Gene

Drugs & Compounds for HOXC-AS1 Gene

No Compound Related Data Available

Transcripts for HOXC-AS1 Gene

mRNA/cDNA for HOXC-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS1 Gene

No ASD Table

Relevant External Links for HOXC-AS1 Gene

GeneLoc Exon Structure for
HOXC-AS1
ECgene alternative splicing isoforms for
HOXC-AS1

Expression for HOXC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.7), Skin - Sun Exposed (Lower leg) (x5.2), Fallopian Tube (x4.9), Adipose - Subcutaneous (x4.8), Skin - Not Sun Exposed (Suprapubic) (x4.6), and Artery - Tibial (x4.4).
genes like me logo Genes that share expression patterns with HOXC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC-AS1 Gene

Orthologs for HOXC-AS1 Gene

Evolution for HOXC-AS1 Gene

ENSEMBL:
Gene Tree for HOXC-AS1 (if available)
TreeFam:
Gene Tree for HOXC-AS1 (if available)

No data available for Orthologs for HOXC-AS1 Gene

Paralogs for HOXC-AS1 Gene

No data available for Paralogs for HOXC-AS1 Gene

Variants for HOXC-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000377526 -- 54,000,843(-) G/A upstream_transcript_variant
rs1001251239 -- 53,999,595(-) T/C intron_variant
rs1001286191 -- 53,999,315(-) G/T intron_variant
rs1001306719 -- 53,999,220(-) G/A non_coding_transcript_variant
rs1002728112 -- 53,998,895(-) C/A/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138
nsv428282 CNV gain 18775914
nsv1143563 CNV deletion 24896259
esv2759900 CNV gain+loss 17122850

Additional Variant Information for HOXC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS1 Gene

Disorders for HOXC-AS1 Gene

Additional Disease Information for HOXC-AS1

No disorders were found for HOXC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS1 Gene

Publications for HOXC-AS1 Gene

  1. Long Noncoding RNA HOXC-AS1 Suppresses Ox-LDL-Induced Cholesterol Accumulation Through Promoting HOXC6 Expression in THP-1 Macrophages. (PMID: 27574949) Huang C … Wang Q (DNA and cell biology 2016) 2 3 58

Products for HOXC-AS1 Gene

Sources for HOXC-AS1 Gene

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