Aliases for HOXB-AS4 Gene

Data sources for HOXB-AS4 Gene:

RNA type for HOXB-AS4 Gene

lncRNA

Aliases for HOXB-AS4 Gene

External Ids for HOXB-AS4 Gene

Previous GeneCards Identifiers for HOXB-AS4 Gene

  • GC17P046707
  • GC17P048628
  • GC17P048635

Summaries for HOXB-AS4 Gene

GeneCards Summary for HOXB-AS4 Gene

HOXB-AS4 (HOXB Cluster Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for HOXB-AS4 Gene

  • mir-196 microRNA precursor family

Additional gene information for HOXB-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HOXB-AS4 Gene

Genomics for HOXB-AS4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HOXB-AS4 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HOXB-AS4 Gene

Latest Assembly
chr17:48,626,874-48,634,933
(GRCh38/hg38)
Size:
8,060 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,706,060-46,712,294
(GRCh37/hg19 by Entrez Gene)
Size:
6,235 bases
Orientation:
Plus strand

chr17:46,706,037-46,712,294
(GRCh37/hg19 by Ensembl)
Size:
6,258 bases
Orientation:
Plus strand

Genomic View for HOXB-AS4 Gene

Genes around HOXB-AS4 on UCSC Golden Path with GeneCards custom track
HOXB-AS4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
HOXB-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS4 Gene

Proteins for HOXB-AS4 Gene

Post-translational modifications for HOXB-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS4 Gene

Domains & Families for HOXB-AS4 Gene

Gene Families for HOXB-AS4 Gene

genes like me logo Genes that share domains with HOXB-AS4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS4 Gene

Function for HOXB-AS4 Gene

Phenotypes From GWAS Catalog for HOXB-AS4 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS4 Gene

Localization for HOXB-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS4 Gene

Pathways & Interactions for HOXB-AS4 Gene

PathCards logo

SuperPathways for HOXB-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HOXB-AS4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS4 Gene

Drugs & Compounds for HOXB-AS4 Gene

No Compound Related Data Available

Transcripts for HOXB-AS4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HOXB-AS4 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004D2F65_9606 lncRNA 214 4

Ensembl: ENST00000462131 (view in UCSC) ,

LncBook: HSALNT0241997,

LNCipedia: HOXB-AS4:2,

NONCODE: NONHSAT054458.2,

URS0000572018_9606 lncRNA 566 3

Ensembl: ENST00000480386 (view in UCSC) ,

LNCipedia: HOXB-AS4:1,

NONCODE: NONHSAT054457.2,

URS0002123147_9606 lncRNA 543 1

RefSeq: NR_046611,

URS00021231AE_9606 lncRNA 513 1

RefSeq: NR_170224,

URS0001BD7659_9606 lncRNA 4498 1

LncBook: HSALNT0241993,

HOXB-AS4 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS4 Gene

No ASD Table

Relevant External Links for HOXB-AS4 Gene

GeneLoc Exon Structure for
HOXB-AS4

No data available for mRNA/cDNA for HOXB-AS4 Gene

Expression for HOXB-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS4 Gene

This gene is overexpressed in Colon - Transverse (x35.7) and Small Intestine - Terminal Ileum (x8.2).
genes like me logo Genes that share expression patterns with HOXB-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS4 Gene

Orthologs for HOXB-AS4 Gene

Evolution for HOXB-AS4 Gene

ENSEMBL:
Gene Tree for HOXB-AS4 (if available)
TreeFam:
Gene Tree for HOXB-AS4 (if available)
Alliance of Genome Resources:
Additional Orthologs for HOXB-AS4

No data available for Orthologs for HOXB-AS4 Gene

Paralogs for HOXB-AS4 Gene

No data available for Paralogs for HOXB-AS4 Gene

Variants for HOXB-AS4 Gene

Additional Variant Information for HOXB-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS4
Leiden Open Variation Database (LOVD)
HOXB-AS4

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS4 Gene

Disorders for HOXB-AS4 Gene

Additional Disease Information for HOXB-AS4

Open Targets Platform
Open Targets Platform

No disorders were found for HOXB-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS4 Gene

Publications for HOXB-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for HOXB-AS4 Gene

Sources for HOXB-AS4 Gene