Aliases for HOXB-AS3 Gene

Subcategory (RNA class) for HOXB-AS3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for HOXB-AS3 Gene

  • HOXB Cluster Antisense RNA 3 2 3 5
  • HOXB Cluster Antisense RNA 3 (Non-Protein Coding) 2 3
  • NONHSAG022078 92
  • HSALNG0117101 167
  • HOXB-AS3 168

External Ids for HOXB-AS3 Gene

Previous GeneCards Identifiers for HOXB-AS3 Gene

  • GC17P046667
  • GC17P046626

Summaries for HOXB-AS3 Gene

GeneCards Summary for HOXB-AS3 Gene

HOXB-AS3 (HOXB Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HOXB-AS3 include Colorectal Cancer.

Additional gene information for HOXB-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXB-AS3 Gene

Genomics for HOXB-AS3 Gene

GeneHancer (GH) Regulatory Elements for HOXB-AS3 Gene

Promoters and enhancers for HOXB-AS3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXB-AS3 Gene

Genomic Locations for HOXB-AS3 Gene
chr17:48,549,630-48,606,414
(GRCh38/hg38)
Size:
56,785 bases
Orientation:
Plus strand
chr17:46,626,992-46,683,776
(GRCh37/hg19)
Size:
56,785 bases
Orientation:
Plus strand

Genomic View for HOXB-AS3 Gene

Genes around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS3 Gene

Proteins for HOXB-AS3 Gene

Post-translational modifications for HOXB-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS3 Gene

Domains & Families for HOXB-AS3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS3 Gene

Function for HOXB-AS3 Gene

Phenotypes From GWAS Catalog for HOXB-AS3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS3 Gene

Localization for HOXB-AS3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXB-AS3 gene
Compartment Confidence
plasma membrane 1
nucleus 1
endoplasmic reticulum 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS3 Gene

Pathways & Interactions for HOXB-AS3 Gene

PathCards logo

SuperPathways for HOXB-AS3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HOXB-AS3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS3 Gene

Drugs & Compounds for HOXB-AS3 Gene

No Compound Related Data Available

Transcripts for HOXB-AS3 Gene

mRNA/cDNA for HOXB-AS3 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS3 Gene

No ASD Table

Relevant External Links for HOXB-AS3 Gene

GeneLoc Exon Structure for
HOXB-AS3

Expression for HOXB-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS3 Gene

This gene is overexpressed in Colon - Sigmoid (x11.0), Kidney - Cortex (x8.6), and Colon - Transverse (x6.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HOXB-AS3

SOURCE GeneReport for Unigene cluster for HOXB-AS3 Gene:

Hs.660088
genes like me logo Genes that share expression patterns with HOXB-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS3 Gene

Orthologs for HOXB-AS3 Gene

Evolution for HOXB-AS3 Gene

ENSEMBL:
Gene Tree for HOXB-AS3 (if available)
TreeFam:
Gene Tree for HOXB-AS3 (if available)

No data available for Orthologs for HOXB-AS3 Gene

Paralogs for HOXB-AS3 Gene

No data available for Paralogs for HOXB-AS3 Gene

Variants for HOXB-AS3 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HOXB-AS3 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs756724993 Uncertain Significance: not specified 48,596,652(+) C/T MISSENSE_VARIANT
rs762346893 Uncertain Significance: not specified 48,598,060(+) C/T MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for HOXB-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897

Additional Variant Information for HOXB-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS3 Gene

Disorders for HOXB-AS3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HOXB-AS3 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HOXB-AS3

genes like me logo Genes that share disorders with HOXB-AS3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXB-AS3 Gene

Publications for HOXB-AS3 Gene

  1. Long non-coding RNA HOXB-AS3 promotes myeloid cell proliferation and its higher expression is an adverse prognostic marker in patients with acute myeloid leukemia and myelodysplastic syndrome. (PMID: 31234830) Huang HH … Chen RH (BMC cancer 2019) 2 3 54
  2. A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth. (PMID: 28985503) Huang JZ … Yan GR (Molecular cell 2017) 3 54
  3. A genome-wide association meta-analysis identifies new childhood obesity loci. (PMID: 22484627) Bradfield JP … Early Growth Genetics Consortium (Nature genetics 2012) 3 54
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for HOXB-AS3 Gene

Sources for HOXB-AS3 Gene