Aliases for HOXB-AS2 Gene

Data sources for HOXB-AS2 Gene:

RNA type for HOXB-AS2 Gene

lncRNA

Aliases for HOXB-AS2 Gene

External Ids for HOXB-AS2 Gene

Previous GeneCards Identifiers for HOXB-AS2 Gene

  • GC17P046635
  • GC17P046636

Summaries for HOXB-AS2 Gene

GeneCards Summary for HOXB-AS2 Gene

HOXB-AS2 (HOXB Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HOXB-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXB-AS2 Gene

Genomics for HOXB-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HOXB-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HOXB-AS2 Gene

Latest Assembly
chr17:48,556,157-48,561,977
(GRCh38/hg38)
Size:
5,821 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,633,519-46,639,339
(GRCh37/hg19 by Entrez Gene)
Size:
5,821 bases
Orientation:
Plus strand

chr17:46,634,624-46,637,695
(GRCh37/hg19 by Ensembl)
Size:
3,072 bases
Orientation:
Plus strand

Genomic View for HOXB-AS2 Gene

Genes around HOXB-AS2 on UCSC Golden Path with GeneCards custom track
HOXB-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
HOXB-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS2 Gene

Proteins for HOXB-AS2 Gene

Post-translational modifications for HOXB-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS2 Gene

Domains & Families for HOXB-AS2 Gene

Gene Families for HOXB-AS2 Gene

genes like me logo Genes that share domains with HOXB-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS2 Gene

Function for HOXB-AS2 Gene

Phenotypes From GWAS Catalog for HOXB-AS2 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS2 Gene

Localization for HOXB-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS2 Gene

Pathways & Interactions for HOXB-AS2 Gene

PathCards logo

SuperPathways for HOXB-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HOXB-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS2 Gene

Drugs & Compounds for HOXB-AS2 Gene

No Compound Related Data Available

Transcripts for HOXB-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HOXB-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005D043E_9606 lncRNA 847 4

Ensembl: ENST00000464382 (view in UCSC) ,

LncBook: HSALNT0241949,

LNCipedia: HOXB-AS2:1,

NONCODE: NONHSAT054411.2,

URS00021231B1_9606 lncRNA 3594 1

RefSeq: NR_046610,

URS00009B9ECA_9606 lncRNA 559 2

LncBook: HSALNT0241950,

NONCODE: NONHSAT175305.1,

HOXB-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HOXB-AS2 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS2 Gene

No ASD Table

Relevant External Links for HOXB-AS2 Gene

GeneLoc Exon Structure for
HOXB-AS2

Expression for HOXB-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS2 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.1), Colon - Sigmoid (x4.9), and Esophagus - Muscularis (x4.3).
genes like me logo Genes that share expression patterns with HOXB-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS2 Gene

Orthologs for HOXB-AS2 Gene

Evolution for HOXB-AS2 Gene

ENSEMBL:
Gene Tree for HOXB-AS2 (if available)
TreeFam:
Gene Tree for HOXB-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for HOXB-AS2

No data available for Orthologs for HOXB-AS2 Gene

Paralogs for HOXB-AS2 Gene

No data available for Paralogs for HOXB-AS2 Gene

Variants for HOXB-AS2 Gene

Additional Variant Information for HOXB-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS2
Leiden Open Variation Database (LOVD)
HOXB-AS2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS2 Gene

Disorders for HOXB-AS2 Gene

Additional Disease Information for HOXB-AS2

Open Targets Platform
Open Targets Platform

No disorders were found for HOXB-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS2 Gene

Publications for HOXB-AS2 Gene

  1. Genome-wide screening of functional long noncoding RNAs in the epicardial adipose tissues of atrial fibrillation. (PMID: 32147422) Shi X … Zhang Y (Biochimica et biophysica acta. Molecular basis of disease 2020) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for HOXB-AS2 Gene

Sources for HOXB-AS2 Gene