Aliases for HOXB-AS2 Gene

Data sources for HOXB-AS2 Gene:

RNA type for HOXB-AS2 Gene


Aliases for HOXB-AS2 Gene

External Ids for HOXB-AS2 Gene

Previous GeneCards Identifiers for HOXB-AS2 Gene

  • GC17P046635
  • GC17P046636

Summaries for HOXB-AS2 Gene

GeneCards Summary for HOXB-AS2 Gene

HOXB-AS2 (HOXB Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HOXB-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXB-AS2 Gene

Genomics for HOXB-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HOXB-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HOXB-AS2 Gene

Latest Assembly
5,821 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
5,821 bases
Plus strand

(GRCh37/hg19 by Ensembl)
3,072 bases
Plus strand

Genomic View for HOXB-AS2 Gene

Genes around HOXB-AS2 on UCSC Golden Path with GeneCards custom track
HOXB-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
HOXB-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS2 Gene

Proteins for HOXB-AS2 Gene

Post-translational modifications for HOXB-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS2 Gene

Domains & Families for HOXB-AS2 Gene

Gene Families for HOXB-AS2 Gene

genes like me logo Genes that share domains with HOXB-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS2 Gene

Function for HOXB-AS2 Gene

Phenotypes From GWAS Catalog for HOXB-AS2 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS2 Gene

Localization for HOXB-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS2 Gene

Pathways & Interactions for HOXB-AS2 Gene

PathCards logo

SuperPathways for HOXB-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HOXB-AS2 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS2 Gene

Drugs & Compounds for HOXB-AS2 Gene

No Compound Related Data Available

Transcripts for HOXB-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HOXB-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005D043E_9606 lncRNA 847 4

Ensembl: ENST00000464382 (view in UCSC) ,

LncBook: HSALNT0241949,

LNCipedia: HOXB-AS2:1,


URS00021231B1_9606 lncRNA 3594 1

RefSeq: NR_046610,

URS00009B9ECA_9606 lncRNA 559 2

LncBook: HSALNT0241950,


HOXB-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HOXB-AS2 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS2 Gene

No ASD Table

Relevant External Links for HOXB-AS2 Gene

GeneLoc Exon Structure for

Expression for HOXB-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS2 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.1), Colon - Sigmoid (x4.9), and Esophagus - Muscularis (x4.3).
genes like me logo Genes that share expression patterns with HOXB-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS2 Gene

Orthologs for HOXB-AS2 Gene

Evolution for HOXB-AS2 Gene

Gene Tree for HOXB-AS2 (if available)
Gene Tree for HOXB-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for HOXB-AS2

No data available for Orthologs for HOXB-AS2 Gene

Paralogs for HOXB-AS2 Gene

No data available for Paralogs for HOXB-AS2 Gene

Variants for HOXB-AS2 Gene

Additional Variant Information for HOXB-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS2 Gene

Disorders for HOXB-AS2 Gene

Additional Disease Information for HOXB-AS2

Open Targets Platform
Open Targets Platform

No disorders were found for HOXB-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS2 Gene

Publications for HOXB-AS2 Gene

  1. Genome-wide screening of functional long noncoding RNAs in the epicardial adipose tissues of atrial fibrillation. (PMID: 32147422) Shi X … Zhang Y (Biochimica et biophysica acta. Molecular basis of disease 2020) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for HOXB-AS2 Gene

Sources for HOXB-AS2 Gene