Aliases for HOXB-AS1 Gene

Subcategory (RNA class) for HOXB-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for HOXB-AS1 Gene

  • HOXB Cluster Antisense RNA 1 2 3 5
  • HOXB Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HSALNG0117101 167
  • NONHSAG022078 92
  • HOXB-AS1 2
  • HOXB3OS 3

External Ids for HOXB-AS1 Gene

Previous GeneCards Identifiers for HOXB-AS1 Gene

  • GC17P046622

Summaries for HOXB-AS1 Gene

GeneCards Summary for HOXB-AS1 Gene

HOXB-AS1 (HOXB Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HOXB-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXB-AS1 Gene

Genomics for HOXB-AS1 Gene

GeneHancer (GH) Regulatory Elements for HOXB-AS1 Gene

Promoters and enhancers for HOXB-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXB-AS1 Gene

Genomic Locations for HOXB-AS1 Gene
chr17:48,543,551-48,551,250
(GRCh38/hg38)
Size:
7,700 bases
Orientation:
Plus strand
chr17:46,620,913-46,628,610
(GRCh37/hg19)
Size:
7,698 bases
Orientation:
Plus strand

Genomic View for HOXB-AS1 Gene

Genes around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS1 Gene

Proteins for HOXB-AS1 Gene

Post-translational modifications for HOXB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS1 Gene

Domains & Families for HOXB-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS1 Gene

Function for HOXB-AS1 Gene

Phenotypes From GWAS Catalog for HOXB-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS1 Gene

Localization for HOXB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS1 Gene

Pathways & Interactions for HOXB-AS1 Gene

PathCards logo

SuperPathways for HOXB-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HOXB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS1 Gene

Drugs & Compounds for HOXB-AS1 Gene

No Compound Related Data Available

Transcripts for HOXB-AS1 Gene

mRNA/cDNA for HOXB-AS1 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
6 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS1 Gene

No ASD Table

Relevant External Links for HOXB-AS1 Gene

GeneLoc Exon Structure for
HOXB-AS1

Expression for HOXB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HOXB-AS1

SOURCE GeneReport for Unigene cluster for HOXB-AS1 Gene:

Hs.171806
genes like me logo Genes that share expression patterns with HOXB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS1 Gene

Orthologs for HOXB-AS1 Gene

Evolution for HOXB-AS1 Gene

ENSEMBL:
Gene Tree for HOXB-AS1 (if available)
TreeFam:
Gene Tree for HOXB-AS1 (if available)

No data available for Orthologs for HOXB-AS1 Gene

Paralogs for HOXB-AS1 Gene

No data available for Paralogs for HOXB-AS1 Gene

Variants for HOXB-AS1 Gene

Additional dbSNP identifiers (rs#s) for HOXB-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1478n106 CNV deletion 24896259
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897
nsv953922 CNV deletion 24416366

Additional Variant Information for HOXB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HOXB-AS1 Gene

Disorders for HOXB-AS1 Gene

Additional Disease Information for HOXB-AS1

No disorders were found for HOXB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS1 Gene

Publications for HOXB-AS1 Gene

  1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. (PMID: 29716997) Aboudehen K … Igarashi P (The Journal of biological chemistry 2018) 2 3 54
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 54

Products for HOXB-AS1 Gene

Sources for HOXB-AS1 Gene