Aliases for HOXB-AS1 Gene

Data sources for HOXB-AS1 Gene:

RNA type for HOXB-AS1 Gene

lncRNA

Aliases for HOXB-AS1 Gene

External Ids for HOXB-AS1 Gene

Previous GeneCards Identifiers for HOXB-AS1 Gene

  • GC17P046622

Summaries for HOXB-AS1 Gene

GeneCards Summary for HOXB-AS1 Gene

HOXB-AS1 (HOXB Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HOXB-AS1 include Autosomal Dominant Polycystic Kidney Disease and Polycystic Kidney Disease.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXB-AS1 Gene

Genomics for HOXB-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HOXB-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXB-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HOXB-AS1 Gene

Latest Assembly
chr17:48,543,551-48,551,250
(GRCh38/hg38)
Size:
7,700 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,621,713-46,628,603
(GRCh37/hg19 by Entrez Gene)
Size:
6,891 bases
Orientation:
Plus strand

chr17:46,620,913-46,628,610
(GRCh37/hg19 by Ensembl)
Size:
7,698 bases
Orientation:
Plus strand

Genomic View for HOXB-AS1 Gene

Genes around HOXB-AS1 on UCSC Golden Path with GeneCards custom track
HOXB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
HOXB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS1 Gene

Proteins for HOXB-AS1 Gene

Post-translational modifications for HOXB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS1 Gene

Domains & Families for HOXB-AS1 Gene

Gene Families for HOXB-AS1 Gene

genes like me logo Genes that share domains with HOXB-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOXB-AS1 Gene

Function for HOXB-AS1 Gene

Phenotypes From GWAS Catalog for HOXB-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS1 Gene

Localization for HOXB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS1 Gene

Pathways & Interactions for HOXB-AS1 Gene

PathCards logo

SuperPathways for HOXB-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HOXB-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOXB-AS1 Gene

Drugs & Compounds for HOXB-AS1 Gene

No Compound Related Data Available

Transcripts for HOXB-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HOXB-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002915A3_9606 lncRNA 680 3

Ensembl: ENST00000504972 (view in UCSC) ,

LncBook: HSALNT0241935,

NONCODE: NONHSAT054403.2,

URS00004A226C_9606 lncRNA 578 3

Ensembl: ENST00000502764 (view in UCSC) ,

LncBook: HSALNT0241945,

NONCODE: NONHSAT054407.2,

URS0000409A97_9606 lncRNA 414 3

Ensembl: ENST00000508688 (view in UCSC) ,

LncBook: HSALNT0241943,

NONCODE: NONHSAT054406.2,

URS00007649D0_9606 lncRNA 806 2

Ensembl: ENST00000435312 (view in UCSC) ,

LncBook: HSALNT0241939,

URS000075DCF5_9606 lncRNA 797 1

RefSeq: NR_102279,

HOXB-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HOXB-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS1 Gene

No ASD Table

Relevant External Links for HOXB-AS1 Gene

GeneLoc Exon Structure for
HOXB-AS1

Expression for HOXB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HOXB-AS1

SOURCE GeneReport for Unigene cluster for HOXB-AS1 Gene:

Hs.171806
genes like me logo Genes that share expression patterns with HOXB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS1 Gene

Orthologs for HOXB-AS1 Gene

Evolution for HOXB-AS1 Gene

ENSEMBL:
Gene Tree for HOXB-AS1 (if available)
TreeFam:
Gene Tree for HOXB-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for HOXB-AS1

No data available for Orthologs for HOXB-AS1 Gene

Paralogs for HOXB-AS1 Gene

No data available for Paralogs for HOXB-AS1 Gene

Variants for HOXB-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for HOXB-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1478n106 CNV deletion 24896259
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897
nsv953922 CNV deletion 24416366

Additional Variant Information for HOXB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS1
Leiden Open Variation Database (LOVD)
HOXB-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HOXB-AS1 Gene

Disorders for HOXB-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for HOXB-AS1 Gene - From: COP and GCD

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HOXB-AS1

genes like me logo Genes that share disorders with HOXB-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXB-AS1 Gene

Publications for HOXB-AS1 Gene

  1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. (PMID: 29716997) Aboudehen K … Igarashi P (The Journal of biological chemistry 2018) 2 3
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for HOXB-AS1 Gene

Sources for HOXB-AS1 Gene