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In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate g... See more...
Aliases for HOXA13 Gene
Aliases for HOXA13 Gene
External Ids for HOXA13 Gene
- HGNC: 5102
- Entrez Gene: 3209
- Ensembl: ENSG00000106031
- OMIM: 142959
- UniProtKB: P31271
Previous HGNC Symbols for HOXA13 Gene
- HOX1J
- HOX1
Previous GeneCards Identifiers for HOXA13 Gene
- GC07M026880
- GC07M026944
- GC07M026978
- GC07M027009
- GC07M027203
- GC07M027235
- GC07M027246
- GC07M027256
- GC07M027194
- GC07M027196
- GC07M027200
Summaries for HOXA13 Gene
-
In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. Expansion of a polyalanine tract in the encoded protein can cause hand-foot-uterus syndrome, also known as hand-foot-genital syndrome. [provided by RefSeq, Jul 2008]
GeneCards Summary for HOXA13 Gene
HOXA13 (Homeobox A13) is a Protein Coding gene. Diseases associated with HOXA13 include Hand-Foot-Genital Syndrome and Preaxial Deficiency, Postaxial Polydactyly, And Hypospadias. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and transcription regulatory region DNA binding. An important paralog of this gene is HOXC13.
UniProtKB/Swiss-Prot Summary for HOXA13 Gene
-
Sequence-specific, AT-rich binding transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
-
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
Additional gene information for HOXA13 Gene
- Monarch Initiative
- Search for HOXA13 at DataMed
- Search for HOXA13 at HumanCyc
No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOXA13 Gene
Genomics for HOXA13 Gene
GeneHancer (GH) Regulatory Elements for HOXA13 Gene
Promoters and enhancers for HOXA13 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HOXA13 on UCSC Golden Path with GeneCards custom track
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for HOXA13
- Top Transcription factor binding sites by QIAGEN in the HOXA13 gene promoter:
-
- AP-1
- ATF-2
- c-Jun
- E2F-1
- MyoD
- p53
- YY1
Genomic Locations for HOXA13 Gene
Genomic Locations for HOXA13 Gene
- chr7:27,193,419-27,200,266
- (GRCh38/hg38)
- Size:
- 6,848 bases
- Orientation:
- Minus strand
- chr7:27,233,122-27,239,725
- (GRCh37/hg19)
- Size:
- 6,604 bases
- Orientation:
- Minus strand
Genomic View for HOXA13 Gene
Genes around HOXA13 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 7p15.2 by HGNC
- 7p15.2 by Entrez Gene
- 7p15.2 by Ensembl
HOXA13 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HOXA13 Gene
Proteins for HOXA13 Gene
-
Protein details for HOXA13 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P31271-HXA13_HUMAN
- Recommended name:
- Homeobox protein Hox-A13
- Protein Accession:
- P31271
- A4D188
- O43371
Protein attributes for HOXA13 Gene
- Size:
- 388 amino acids
- Molecular mass:
- 39727 Da
- Quaternary structure:
-
- Binds DNA as a homodimer. Interacts with MEIS1, MEIS2 and MEIS3 (By similarity).
Protein Expression for HOXA13 Gene
Post-translational modifications for HOXA13 Gene
Other Protein References for HOXA13 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Creative Diagnostics Anti-HOXA13 monoclonal antibody, clone FQS21468
-
Custom Antibody ServicesOriGene Antibodies for HOXA13
-
Abcam antibodies for HOXA13
- Invitrogen Antibodies for HOXA13 (AFLGC-HOXA13)
Protein Products
- Creative Biomart Recombinant Human HOXA13
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HOXA13
- Origene Custom Protein Services for HOXA13
- Novus Biologicals proteins for HOXA13
- antibodies-online: Show 4 available HOXA13 Proteins ranked by validation data
- Compare Top HOXA13 Proteins
-
Quality Products:
-
Abcam proteins for HOXA13
No data available for DME Specific Peptides for HOXA13 Gene
Domains & Families for HOXA13 Gene
Gene Families for HOXA13 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Cancer-related genes
- Disease related genes
- Predicted intracellular proteins
- Transcription factors
Protein Domains for HOXA13 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for HOXA13 Gene
- GenScript: Design optimal peptide antigens:
-
- Homeobox protein Hox-1J (HXA13_HUMAN)
- Homeobox A13 (Q6DI00_HUMAN)
Graphical View of Domain Structure for InterPro Entry
P31271- Family:
-
- Belongs to the Abd-B homeobox family.
Function for HOXA13 Gene
Molecular function for HOXA13 Gene
- UniProtKB/Swiss-Prot Function:
- Sequence-specific, AT-rich binding transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
- UniProtKB/Swiss-Prot Function:
- Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
- GENATLAS Biochemistry:
- homeo box A13(1J),homologous to mouse Hox-1.10 (hypodactyly),expressed in the developing lower genitourinary tract (abnormal seminal vesicle and prostate development),altered in hypodactyly mutants
Phenotypes From GWAS Catalog for HOXA13 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | NAS | 19274049 |
| GO:0003677 | DNA binding | TAS | 9020844 |
| GO:0043565 | sequence-specific DNA binding | IMP | 23332764 |
Phenotypes for HOXA13 Gene
- MGI mutant phenotypes for HOXA13:
-
inferred from 7 alleles
- cardiovascular system phenotype
- limbs/digits/tail phenotype
- vision/eye phenotype
- digestive/alimentary phenotype
- homeostasis/metabolism phenotype
- integument phenotype
- endocrine/exocrine gland phenotype
- mortality/aging
- reproductive system phenotype
- skeleton phenotype
- embryo phenotype
- renal/urinary system phenotype
- growth/size/body region phenotype
- GenomeRNAi human phenotypes for HOXA13:
-
- Decreased shRNA abundance (Z-score < -2)
- Negative genetic interaction between PTTG1-/- and PTTG1+/+
- Negative genetic interaction between MUS81-/- and MUS81+/+
- Upregulation of Wnt/beta-catenin pathway after WNT3A stimulation
- Increased shRNA abundance (Z-score > 2)
- Decreased viability
- no effect
- Increased vaccinia virus (VACV) infection
- Decreased IL-8 secretion
- Increased viability
Animal Models for HOXA13 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HOXA13 - Select products 50% OFF >
- * HOXA13 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for HOXA13
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HOXA13
- genomics-online: gRNA clones - Search results for available HOXA13 gene related products
-
Santa Cruz Biotechnology (SCBT) CRISPR for HOXA13
miRNA for HOXA13 Gene
- miRTarBase miRNAs that target HOXA13
-
- hsa-mir-142-3p (MIRT021544)
- hsa-mir-215-5p (MIRT024658)
- hsa-mir-192-5p (MIRT026124)
- hsa-mir-760 (MIRT036765)
- hsa-mir-125b-5p (MIRT045907)
- hsa-mir-222-3p (MIRT046676)
- hsa-mir-519d-5p (MIRT320503)
- hsa-mir-3611 (MIRT497028)
- hsa-mir-4252 (MIRT497029)
- hsa-mir-551b-5p (MIRT497030)
- hsa-mir-197-3p (MIRT532475)
- hsa-mir-6828-5p (MIRT532476)
- hsa-mir-4696 (MIRT532477)
- hsa-mir-6837-3p (MIRT532478)
- hsa-mir-6754-3p (MIRT532479)
- hsa-mir-412-3p (MIRT532480)
- hsa-mir-3922-5p (MIRT532481)
- hsa-mir-451b (MIRT532482)
- hsa-mir-6807-3p (MIRT532483)
- hsa-mir-217 (MIRT532484)
- hsa-mir-4643 (MIRT532485)
- hsa-mir-7109-5p (MIRT532486)
- hsa-mir-6885-5p (MIRT532487)
- hsa-mir-328-5p (MIRT532488)
- hsa-mir-6887-5p (MIRT532489)
- hsa-mir-6795-5p (MIRT532490)
- hsa-mir-625-5p (MIRT532491)
- hsa-mir-4668-5p (MIRT532492)
- hsa-mir-3148 (MIRT532493)
- hsa-mir-637 (MIRT532494)
- hsa-mir-4286 (MIRT532495)
- hsa-mir-5003-5p (MIRT532496)
- hsa-mir-3529-3p (MIRT532497)
- hsa-mir-6732-3p (MIRT532498)
- hsa-mir-4668-3p (MIRT532499)
- hsa-mir-605-5p (MIRT532500)
- hsa-mir-548c-3p (MIRT532501)
- hsa-mir-6738-3p (MIRT557129)
- hsa-mir-544a (MIRT557130)
- hsa-mir-374b-3p (MIRT557131)
- hsa-mir-4477a (MIRT557132)
- hsa-mir-889-3p (MIRT557133)
- hsa-mir-548au-3p (MIRT557134)
- hsa-mir-5589-3p (MIRT557135)
- hsa-mir-496 (MIRT557136)
- hsa-mir-17-3p (MIRT557137)
- hsa-mir-1205 (MIRT557138)
- hsa-mir-1184 (MIRT557139)
- hsa-mir-3158-5p (MIRT557140)
- hsa-mir-5190 (MIRT557141)
- hsa-mir-4496 (MIRT557142)
- hsa-mir-5197-5p (MIRT557143)
- hsa-mir-559 (MIRT557144)
- hsa-mir-548y (MIRT557145)
- hsa-mir-548w (MIRT557146)
- hsa-mir-548o-5p (MIRT557147)
- hsa-mir-548j-5p (MIRT557148)
- hsa-mir-548i (MIRT557149)
- hsa-mir-548h-5p (MIRT557150)
- hsa-mir-548d-5p (MIRT557151)
- hsa-mir-548c-5p (MIRT557152)
- hsa-mir-548bb-5p (MIRT557153)
- hsa-mir-548b-5p (MIRT557154)
- hsa-mir-548ay-5p (MIRT557155)
- hsa-mir-548au-5p (MIRT557156)
- hsa-mir-548as-5p (MIRT557157)
- hsa-mir-548ar-5p (MIRT557158)
- hsa-mir-548aq-5p (MIRT557159)
- hsa-mir-548ap-5p (MIRT557160)
- hsa-mir-548am-5p (MIRT557161)
- hsa-mir-548ak (MIRT557162)
- hsa-mir-548ae-5p (MIRT557163)
- hsa-mir-548ad-5p (MIRT557164)
- hsa-mir-548ab (MIRT557165)
- hsa-mir-548a-5p (MIRT557166)
- hsa-mir-583 (MIRT557167)
- hsa-mir-1276 (MIRT557168)
- hsa-mir-4311 (MIRT557169)
- hsa-mir-34c-5p (MIRT557170)
- hsa-mir-449a (MIRT557171)
- hsa-mir-449b-5p (MIRT557172)
- hsa-mir-34a-5p (MIRT557173)
- hsa-mir-6081 (MIRT562163)
- hsa-mir-8064 (MIRT562164)
- hsa-mir-4254 (MIRT562165)
- hsa-mir-3620-3p (MIRT562166)
- hsa-mir-4308 (MIRT562167)
- hsa-mir-92b-3p (MIRT562168)
- hsa-mir-92a-3p (MIRT562169)
- hsa-mir-367-3p (MIRT562170)
- hsa-mir-363-3p (MIRT562171)
- hsa-mir-32-5p (MIRT562172)
- hsa-mir-25-3p (MIRT562173)
- hsa-mir-504-5p (MIRT562174)
- hsa-mir-4290 (MIRT627037)
- hsa-mir-6809-3p (MIRT627038)
- hsa-mir-6833-3p (MIRT627039)
- hsa-mir-4768-5p (MIRT627040)
- hsa-mir-6873-3p (MIRT627041)
- hsa-mir-6749-3p (MIRT627042)
- hsa-mir-6792-3p (MIRT627043)
- hsa-mir-4691-5p (MIRT627044)
- hsa-mir-539-3p (MIRT627045)
- hsa-mir-485-3p (MIRT627046)
- hsa-mir-1236-3p (MIRT627047)
- hsa-mir-6515-3p (MIRT627048)
- hsa-mir-6845-3p (MIRT627049)
- hsa-mir-660-3p (MIRT627050)
- hsa-mir-5193 (MIRT627051)
- hsa-mir-1-5p (MIRT627052)
- hsa-mir-3675-3p (MIRT627053)
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HOXA13
- Browse OriGene Inhibitory RNA Products For HOXA13
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HOXA13
- genomics-online: shRNA clones - Search results for available HOXA13 gene related products
Clone Products
- Applied Biological Materials (abm): Clones for HOXA13 - Select products 50% OFF >
- * HOXA13 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for HOXA13
- Addgene plasmids for HOXA13
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HOXA13
- genomics-online: cdna clones - Search results for available HOXA13 gene related products
- orf clones - Search results for available HOXA13 gene related products
Cell Line Products
-
Horizon Cell Lines for HOXA13
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for HOXA13 Gene
Localization for HOXA13 Gene
Subcellular locations from UniProtKB/Swiss-Prot for HOXA13 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytoskeleton | 4 |
| cytosol | 4 |
| plasma membrane | 2 |
| extracellular | 2 |
| mitochondrion | 1 |
| endoplasmic reticulum | 1 |
- Nucleoplasm (3)
- Intermediate filaments (1)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000790 | nuclear chromatin | ISA | -- |
| GO:0005634 | nucleus | IEA | -- |
| GO:0005654 | nucleoplasm | IDA | -- |
| GO:0005829 | cytosol | IDA | -- |
| GO:0045111 | intermediate filament cytoskeleton | IDA | -- |
Pathways & Interactions for HOXA13 Gene
;
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001501 | skeletal system development | TAS | 9020844 |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0006357 | regulation of transcription by RNA polymerase II | IEA | -- |
| GO:0007275 | multicellular organism development | IEA | -- |
No data available for Pathways by source for HOXA13 Gene
Drugs & Compounds for HOXA13 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|
Drug Products
- Creative Biomart Recombinant Human HOXA13
Transcripts for HOXA13 Gene
mRNA/cDNA for HOXA13 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000518136 871 bps (ENST00000518136.3)
- ENST00000649031 5015 bps (ENST00000649031.1)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HOXA13 - Select products 50% OFF >
- * HOXA13 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for HOXA13
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HOXA13
- genomics-online: gRNA clones - Search results for available HOXA13 gene related products
-
Santa Cruz Biotechnology (SCBT) CRISPR for HOXA13
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for HOXA13
- Browse OriGene Inhibitory RNA Products For HOXA13
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HOXA13
- genomics-online: shRNA clones - Search results for available HOXA13 gene related products
Clone Products
- Applied Biological Materials (abm): Clones for HOXA13 - Select products 50% OFF >
- * HOXA13 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for HOXA13
- Addgene plasmids for HOXA13
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HOXA13
- genomics-online: cdna clones - Search results for available HOXA13 gene related products
- orf clones - Search results for available HOXA13 gene related products
Relevant External Links for HOXA13 Gene
- GeneLoc Exon Structure for
- HOXA13
Expression for HOXA13 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- NULL (Uncategorized)
-
Limb (Muscoskeletal System)
- Limb Bud Mesenchyme Cells Limb Bud
- Prechondrocytic Mesenchymal Cells Autopod
- Bone (Muscoskeletal System)
- Mesenchymal Stem Cells (Uncategorized)
- Umbilical Cord (Extraembryonic Tissues)
-
Mesoderm (Gastrulation Derivatives)
- Limb Bud Mesenchyme Cells Limb Bud
- Cartilage (Muscoskeletal System)
- Lower Urinary Tract (Urinary System)
-
Colon (Gastrointestinal Tract)
-
Prostate (Endocrine System)
-
Placenta (Extraembryonic Tissues)
mRNA differential expression in normal tissues according to GTEx for HOXA13 Gene
This gene is overexpressed in Cervix - Ectocervix (x11.5), Cervix - Endocervix (x11.2), Vagina (x7.6), Bladder (x7.0), Prostate (x4.9), and Colon - Transverse (x4.5).
This gene is overexpressed in Cervix (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for HOXA13 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HOXA13
SOURCE GeneReport for Unigene cluster for HOXA13 Gene:
Hs.592172Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA13 Gene
Germ Layers:
- ectoderm
- endoderm
- mesoderm
Systems:
- immune
- integumentary
- reproductive
- skeletal muscle
- skeleton
- urinary
Regions:
Abdomen:
- kidney
Pelvis:
- ovary
- penis
- ureter
- urethra
- urinary bladder
- uterus
- vagina
Limb:
- digit
- finger
- foot
- hand
- lower limb
- nail
- toe
- upper limb
General:
- blood
- skin
- white blood cell
Primer Products
-
OriGene qPCR primer pairs for HOXA13
-
OriGene qPCR primer pairs and template standards for HOXA13
- genomics-online: primer clones - Search results for available HOXA13 gene related products
Gene Expression Assay Products
No data available for mRNA Expression by UniProt/SwissProt and Evidence on tissue expression from TISSUES for HOXA13 Gene
Orthologs for HOXA13 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HOXA13 31 30 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | HOXA13 31 30 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | HOXA13 31 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Hoxa13 17 31 30 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC102550333 30 |
|
||
| cow (Bos Taurus) |
Mammalia | HOXA13 31 30 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | HOXA13 31 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | HOXA13 31 31 31 |
|
OneToMany | |
| LOC100859244 30 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | HOXA13 31 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | hoxa13 30 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | hoxa13-A 30 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | hoxa13b 31 30 30 |
|
OneToMany | |
| hoxa13a 31 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | Abd-B 31 |
|
OneToMany |
- Species where no ortholog for HOXA13 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for HOXA13 Gene
- ENSEMBL:
- Gene Tree for HOXA13 (if available)
- TreeFam:
- Gene Tree for HOXA13 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for HOXA13: view image
Paralogs for HOXA13 Gene
Paralogs for HOXA13 Gene
- HOXC13 5
- HOXD13 5
- HOXB13 5
- HOXC9 5
- HOXD9 5
- HOXA10 5
- HOXB9 5
- HOXC10 5
- HOXC12 5
- HOXC11 5
- HOXD10 5
- HOXD12 5
- HOXA11 5
- HOXD11 5
- HOXA3 5
- HOXA5 5
- HOXB5 5
- HOXA1 5
- HOXD1 5
- HOXB3 5
- HOXD8 5
- HOXB1 5
- HOXB7 5
- PDX1 5
- HOXB4 5
- HOXC8 5
- HOXD3 5
- HOXB8 5
- HOXA4 5
- HOXB6 5
- HOXA6 5
- HOXD4 5
- HOXB2 5
- HOXA7 5
- HOXC6 5
- HOXC4 5
- GSX2 5
- TLX1 5
- HOXA2 5
- HOXC5 5
- TLX2 5
- TLX3 5
- ENSG00000273049 5
(5) SIMAP similar genes for HOXA13 Gene using alignment to 3 proteins:
- HXA13_HUMAN
- I6N936_HUMAN
- Q6DI00_HUMAN
Variants for HOXA13 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HOXA13 Gene
| SNP ID | Clinical significance and condition | Chr 07 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 713824 | Benign: not provided | 27,198,363(-) | T/C | SYNONYMOUS_VARIANT | |
| 720370 | Benign: not provided | 27,199,598(-) | C/T | SYNONYMOUS_VARIANT | |
| 726530 | Likely Benign: not provided | 27,199,736(-) | C/T | SYNONYMOUS_VARIANT | |
| 729857 | Likely Benign: not provided | 27,199,503(-) | T/C | MISSENSE_VARIANT | |
| 731707 | Benign: not provided | 27,199,487(-) | G/T | SYNONYMOUS_VARIANT |
Residual Variation Intolerance Score:
51.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
2.41;
42.64% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for HOXA13 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOXA13 Gene
Disorders for HOXA13 Gene
(11) MalaCards diseases for HOXA13 Gene - From: LncRNADisease, UniProtKB/Swiss-Prot, OMIM, ClinVar, GTR, Orphanet, DISEASES, Novoseek, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hand-foot-genital syndrome |
|
|
| preaxial deficiency, postaxial polydactyly, and hypospadias |
|
|
| gastric cancer |
|
|
| hepatocellular carcinoma |
|
|
| hypospadias |
|
Search HOXA13 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
HXA13_HUMAN- Hand-foot-genital syndrome (HFG) [MIM:140000]: A disorder characterized by limb and genitourinary anomalies. Clinical features include small feet with unusually short great toes and abnormal thumbs. Females with the disorder have duplication of the genital tract. {ECO:0000269 PubMed:10839976, ECO:0000269 PubMed:12073020, ECO:0000269 PubMed:24934387, ECO:0000269 PubMed:26590955}. Note=The disease is caused by mutations affecting the gene represented in this entry.
- Guttmacher syndrome (GUTTS) [MIM:176305]: Dominantly inherited combination of distal limb and genital tract abnormalities. It has several features in common with hand-foot-genital syndrome, including hypoplastic first digits and hypospadias. Typical features not seen in hand-foot-genital syndrome include postaxial polydactyly of the hands and uniphalangeal second toes with absent nails. {ECO:0000269 PubMed:11968094}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Additional Disease Information for HOXA13
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for HOXA13 Gene
Publications for HOXA13 Gene
- A HOXA13 allele with a missense mutation in the homeobox and a dinucleotide deletion in the promoter underlies Guttmacher syndrome. (PMID: 11968094) Innis JW … Guttmacher AE (Human mutation 2002) 3 4 23 54
- Novel HOXA13 mutations and the phenotypic spectrum of hand-foot-genital syndrome. (PMID: 10839976) Goodman FR … Scambler PJ (American journal of human genetics 2000) 3 4 23 54
- Mutation of HOXA13 in hand-foot-genital syndrome. (PMID: 9020844) Mortlock DP … Innis JW (Nature genetics 1997) 3 4 23 54
- Dual genetic diagnoses: Atypical hand-foot-genital syndrome and developmental delay due to de novo mutations in HOXA13 and NRXN1. (PMID: 26590955) Wallis M … Patel C (American journal of medical genetics. Part A 2016) 3 4 54
- Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. (PMID: 21829694) Zhang Y … Ames JB (PloS one 2011) 3 4 54
ExternalLinks
Products for HOXA13 Gene
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Sources for HOXA13 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
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- (44) Atlas
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- (48) HUGE
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- (51) miRBase
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- (63) Qiagen
- (64) OCA
- (65) Proteopedia
- (66) MOPED
- (67) neXtProt
- (68) Reactome
- (69) GeneGo (Thomson Reuters)
- (70) DISEASES
- (71) SIMAP
- (72) GenomeRNAi
- (73) LifeMap
- (74) miRTarBase
- (75) MalaCards
- (76) Invitrogen
- (77) BitterDB
- (78) ESI-BIO
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- (105) diseasecard
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