Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXA10-AS Gene

Subcategory (RNA class) for HOXA10-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXA10-AS Gene

  • HOXA10 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 4 (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 4 2
  • HOXA-AS4 3

External Ids for HOXA10-AS Gene

Previous HGNC Symbols for HOXA10-AS Gene

  • HOXA-AS4

Previous GeneCards Identifiers for HOXA10-AS Gene

  • GC07P027216

Summaries for HOXA10-AS Gene

GeneCards Summary for HOXA10-AS Gene

HOXA10-AS (HOXA10 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXA10-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA10-AS Gene

Genomics for HOXA10-AS Gene

GeneHancer (GH) Regulatory Elements for HOXA10-AS Gene

Promoters and enhancers for HOXA10-AS Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J027095 Promoter/Enhancer 3.4 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.6 -30.4 -30424 86.3 MLX FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC SSRP1 ZNF610 HOXA2 HOXA9 HOXA10 HOXA1 HOXA3 HOXA6 HOXA4 HOXA5 HOXA7 HNRNPA2B1
GH07J026862 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.7 -304.5 -304505 3.1 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SKAP2 HOTAIRM1 HMGB3P20 TPM3P4 RPL23P7 PSMC1P2 HNRNPA2B1 HOXA-AS3 HOXA4 HOXA3
GH07J026372 Promoter/Enhancer 1.9 UCNEbase Ensembl ENCODE 12 -793.7 -793684 5.6 HDGF ARID4B SIN3A FEZF1 ZNF2 ZNF143 ZNF548 SP3 REST ZNF662 LOC105375304 HNRNPA2B1 RPL23P7 TPM3P4 HMGB3P20 ENSG00000227386 HOXA10-AS HOXA9 CBX3 KIAA0087
GH07J027199 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 8.3 +31.7 31743 1.5 INSM2 KLF17 SIN3A GLI4 KLF14 ZNF2 ZEB1 ZNF335 GLIS2 ZNF213 ENSG00000276609 ENSG00000277469 ENSG00000278708 HOXA13 HOTTIP HOXA10-AS
GH07J027181 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 7.2 +15.7 15700 5.1 HDGF PKNOX1 FEZF1 ZNF2 YY1 GLIS2 ELK1 KLF7 REST SMARCB1 HOXA11-AS ENSG00000273961 ENSG00000276496 ENSG00000278334 GC07P027266 GC07P027267 HOXA11 HOXA10-AS HOTAIRM1 HOXA10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Regulatory Element Products

Genomic Locations for HOXA10-AS Gene

Genomic Locations for HOXA10-AS Gene
3,297 bases
Plus strand
3,297 bases
Plus strand

Genomic View for HOXA10-AS Gene

Genes around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA10-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA10-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA10-AS Gene

Function for HOXA10-AS Gene

Phenotypes From GWAS Catalog for HOXA10-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA10-AS Gene

Localization for HOXA10-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXA10-AS Gene

Pathways & Interactions for HOXA10-AS Gene

SuperPathways for HOXA10-AS Gene

No Data Available

Interacting Proteins for HOXA10-AS Gene

Gene Ontology (GO) - Biological Process for HOXA10-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXA10-AS Gene

Drugs & Compounds for HOXA10-AS Gene

No Compound Related Data Available

Transcripts for HOXA10-AS Gene

mRNA/cDNA for HOXA10-AS Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA10-AS Gene

No ASD Table

Relevant External Links for HOXA10-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXA10-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA10-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA10-AS Gene

This gene is overexpressed in Uterus (x7.0) and Muscle - Skeletal (x5.5).
genes like me logo Genes that share expression patterns with HOXA10-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA10-AS Gene

Orthologs for HOXA10-AS Gene

Evolution for HOXA10-AS Gene

Gene Tree for HOXA10-AS (if available)
Gene Tree for HOXA10-AS (if available)

No data available for Orthologs for HOXA10-AS Gene

Paralogs for HOXA10-AS Gene

No data available for Paralogs for HOXA10-AS Gene

Variants for HOXA10-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA10-AS Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000999605 -- 27,167,615(+) T/C upstream_transcript_variant
rs1001052090 -- 27,167,291(+) G/A upstream_transcript_variant
rs1002835168 -- 27,170,176(+) C/G intron_variant
rs1003230290 -- 27,168,846(+) A/T upstream_transcript_variant
rs1003298437 -- 27,170,006(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HOXA10-AS Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Additional Variant Information for HOXA10-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA10-AS Gene

Disorders for HOXA10-AS Gene

Additional Disease Information for HOXA10-AS

No disorders were found for HOXA10-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA10-AS Gene

Publications for HOXA10-AS Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58

Products for HOXA10-AS Gene

Sources for HOXA10-AS Gene

Loading form....