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Aliases for HORMAD2-AS1 Gene

Subcategory (RNA class) for HORMAD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HORMAD2-AS1 Gene

  • HORMAD2 And MTMR3 Antisense RNA 1 2 3 5
  • HORMAD2 Antisense RNA 1 2 3
  • NONHSAG033653 3
  • MTMR3-AS1 3

External Ids for HORMAD2-AS1 Gene

Summaries for HORMAD2-AS1 Gene

GeneCards Summary for HORMAD2-AS1 Gene

HORMAD2-AS1 (HORMAD2 And MTMR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HORMAD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HORMAD2-AS1 Gene

Genomics for HORMAD2-AS1 Gene

GeneHancer (GH) Regulatory Elements for HORMAD2-AS1 Gene

Promoters and enhancers for HORMAD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I030080 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 561 +0.2 249 0.5 RXRA HNF4A HORMAD2-AS1 HORMAD2
GH22I030078 Enhancer 0.6 ENCODE 563 +1.5 1464 0.8 SRF ZNF362 JUNB EBF1 ELF1 BATF RELA OSR2 NFIC IKZF1 HORMAD2-AS1 HORMAD2 ASCC2 CNN2P1
GH22I030234 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.3 -166.3 -166250 24.6 PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B ZNF416 ZNF143 FOS ZNF263 SP5 LIF LOC91370 TUG1 SF3A1 EWSR1 MORC2 PES1 RNF215 TBC1D10A ENSG00000272689
GH22I029765 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 14.4 +313.2 313175 2.7 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 UQCR10 ZMAT5 HORMAD2-AS1 ASCC2 MTMR3
GH22I030201 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.7 -127.3 -127289 12.4 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 FOS SP5 LOC105372988 OSM TUG1 HORMAD2-AS1 MTMR3 MORC2 RNF215 EWSR1 PES1 THOC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HORMAD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HORMAD2-AS1 Gene

Genomic Locations for HORMAD2-AS1 Gene
chr22:30,008,742-30,080,480
(GRCh38/hg38)
Size:
71,739 bases
Orientation:
Minus strand
chr22:30,404,731-30,476,469
(GRCh37/hg19)

Genomic View for HORMAD2-AS1 Gene

Genes around HORMAD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HORMAD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HORMAD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HORMAD2-AS1 Gene

Proteins for HORMAD2-AS1 Gene

Post-translational modifications for HORMAD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HORMAD2-AS1 Gene

Domains & Families for HORMAD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HORMAD2-AS1 Gene

Function for HORMAD2-AS1 Gene

Phenotypes From GWAS Catalog for HORMAD2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HORMAD2-AS1 Gene

Localization for HORMAD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HORMAD2-AS1 Gene

Pathways & Interactions for HORMAD2-AS1 Gene

SuperPathways for HORMAD2-AS1 Gene

No Data Available

Interacting Proteins for HORMAD2-AS1 Gene

Gene Ontology (GO) - Biological Process for HORMAD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HORMAD2-AS1 Gene

Drugs & Compounds for HORMAD2-AS1 Gene

No Compound Related Data Available

Transcripts for HORMAD2-AS1 Gene

mRNA/cDNA for HORMAD2-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HORMAD2-AS1 Gene

No ASD Table

Relevant External Links for HORMAD2-AS1 Gene

GeneLoc Exon Structure for
HORMAD2-AS1
ECgene alternative splicing isoforms for
HORMAD2-AS1

Expression for HORMAD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HORMAD2-AS1 Gene

genes like me logo Genes that share expression patterns with HORMAD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HORMAD2-AS1 Gene

Orthologs for HORMAD2-AS1 Gene

Evolution for HORMAD2-AS1 Gene

ENSEMBL:
Gene Tree for HORMAD2-AS1 (if available)
TreeFam:
Gene Tree for HORMAD2-AS1 (if available)

No data available for Orthologs for HORMAD2-AS1 Gene

Paralogs for HORMAD2-AS1 Gene

No data available for Paralogs for HORMAD2-AS1 Gene

Variants for HORMAD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HORMAD2-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000005419 -- 30,031,988(-) A/G intron_variant
rs1000014903 -- 30,025,903(-) T/C intron_variant
rs1000060102 -- 30,023,000(-) T/C intron_variant
rs1000067252 -- 30,049,083(-) C/ intron_variant
rs1000186693 -- 30,071,637(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HORMAD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv761n67 CNV gain 20364138
dgv838e214 CNV gain 21293372
esv2669796 CNV deletion 23128226
esv3307560 CNV mobile element insertion 20981092
esv3441917 CNV insertion 20981092
esv3647554 CNV loss 21293372
esv3647555 CNV loss 21293372
nsv1110864 OTHER inversion 24896259
nsv3592 CNV insertion 18451855
nsv507930 OTHER sequence alteration 20534489
nsv507931 OTHER sequence alteration 20534489
nsv819812 CNV gain 19587683
nsv829165 CNV gain 20364138
nsv829168 CNV gain 20364138
nsv964619 CNV duplication 23825009

Additional Variant Information for HORMAD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HORMAD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HORMAD2-AS1 Gene

Disorders for HORMAD2-AS1 Gene

Additional Disease Information for HORMAD2-AS1

No disorders were found for HORMAD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HORMAD2-AS1 Gene

Publications for HORMAD2-AS1 Gene

  1. Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci. (PMID: 25144376) Mirza AH … Pociot F (PloS one 2014) 2 3 58
  2. A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. (PMID: 22197929) Yu XQ … Liu JJ (Nature genetics 2011) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for HORMAD2-AS1 Gene

Sources for HORMAD2-AS1 Gene

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