HORMAD2-AS1 Gene (RNA Gene)

HORMAD2 And MTMR3 Antisense RNA 1

GC22M030008
GIFtS:
12
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Aliases for HORMAD2-AS1 Gene

Subcategory (RNA class) for HORMAD2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HORMAD2-AS1 Gene

  • HORMAD2 And MTMR3 Antisense RNA 1 2 3 5
  • HORMAD2-AS1 2 5 165
  • HORMAD2 Antisense RNA 1 2 3
  • NONHSAG033653 2 3
  • MTMR3-AS1 2 3
  • NONHSAG033657.2 91
  • NONHSAG033653.2 91
  • HSALNG0134860 164
  • HSALNG0134861 164

External Ids for HORMAD2-AS1 Gene

Summaries for HORMAD2-AS1 Gene

GeneCards Summary for HORMAD2-AS1 Gene

HORMAD2-AS1 (HORMAD2 And MTMR3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HORMAD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HORMAD2-AS1 Gene

Genomics for HORMAD2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HORMAD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J030079 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 610.9 +0.8 794 1 PRDM10 HNF4A RXRA SP1 HORMAD2-AS1 HORMAD2 RF00017-3798 lnc-LIF-4 lnc-ASCC2-1 LIF
GH22J030078 Promoter/Enhancer 0.9 Ensembl ENCODE 612.9 +1.9 1879 0.8 PRDM10 RELA IKZF2 EED RELB RUNX3 OSR2 ELF1 NFIC JUNB HORMAD2-AS1 HORMAD2 RF00017-3798 lnc-LIF-4 ASCC2 piR-57133-390 lnc-ASCC2-1 MTMR3
GH22J030234 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 -165.8 -165819 24.6 HNRNPL CREB1 CTCF PRDM10 ZNF629 ZNF512 IKZF1 KDM1A ZNF692 LARP7 LIF LOC91370 TUG1 SF3A1 EWSR1 MORC2 PES1 RNF215 TBC1D10A THOC5
GH22J030201 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.7 -126.8 -126834 12.3 HNRNPL GATAD2A ATF7 TEAD4 PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ LOC105372988 TUG1 EWSR1 MORC2 PES1 OSM SF3A1 HORMAD2-AS1 LOC91370 MTMR3
GH22J029765 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 14.4 +313.6 313594 3.4 BRCA1 CREB1 ZNF629 PRDM10 REST SIX5 IKZF1 NFKBIZ ZNF692 POLR2A ENSG00000287967 ZMAT5 UQCR10 lnc-ZMAT5-2 EWSR1 HORMAD2-AS1 SF3A1 ASCC2 MTMR3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HORMAD2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HORMAD2-AS1 Gene

Genomic Locations for HORMAD2-AS1 Gene
chr22:30,008,742-30,080,895
(GRCh38/hg38)
Size:
72,154 bases
Orientation:
Minus strand
chr22:30,404,731-30,476,469
(GRCh37/hg19)
Size:
71,739 bases
Orientation:
Minus strand

Genomic View for HORMAD2-AS1 Gene

Genes around HORMAD2-AS1 on UCSC Golden Path with GeneCards custom track
HORMAD2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HORMAD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HORMAD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HORMAD2-AS1 Gene

Proteins for HORMAD2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HORMAD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HORMAD2-AS1 Gene

Domains & Families for HORMAD2-AS1 Gene

Gene Families for HORMAD2-AS1 Gene

HGNC:
genes like me logo Genes that share domains with HORMAD2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HORMAD2-AS1 Gene

Function for HORMAD2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HORMAD2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HORMAD2-AS1 Gene

Localization for HORMAD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HORMAD2-AS1 Gene

Pathways & Interactions for HORMAD2-AS1 Gene

PathCards logo

SuperPathways for HORMAD2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HORMAD2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HORMAD2-AS1 Gene

Drugs & Compounds for HORMAD2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HORMAD2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HORMAD2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000049FCD_9606 lncRNA 902 3

Ensembl: ENST00000429350 (view in UCSC) ,

LNCipedia: HORMAD2-AS1:6,

NONCODE: NONHSAT084745.2,

URS00000A5F0D_9606 lncRNA 580 3

Ensembl: ENST00000453743 (view in UCSC) ,

LNCipedia: HORMAD2-AS1:3,

NONCODE: NONHSAT084748.2,

URS0000EEACE2_9606 lncRNA 924 2

HGNC: 50729,

RefSeq: NR_110541,

URS00005860FA_9606 lncRNA 727 2

Ensembl: ENST00000432568 (view in UCSC) ,

LNCipedia: HORMAD2-AS1:5,

URS00008BA90F_9606 lncRNA 657 3

LncBook: HSALNT0276841,

LNCipedia: HORMAD2-AS1:7,

NONCODE: NONHSAT084746.2,

HORMAD2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HORMAD2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HORMAD2-AS1 Gene

No ASD Table

Relevant External Links for HORMAD2-AS1 Gene

GeneLoc Exon Structure for
HORMAD2-AS1

Expression for HORMAD2-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HORMAD2-AS1 Gene

mRNA expression in normal human tissues for HORMAD2-AS1 Gene
mRNA expression by GTEx for HORMAD2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HORMAD2-AS1

genes like me logo Genes that share expression patterns with HORMAD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HORMAD2-AS1 Gene

Orthologs for HORMAD2-AS1 Gene

Evolution for HORMAD2-AS1 Gene

ENSEMBL:
Gene Tree for HORMAD2-AS1 (if available)
TreeFam:
Gene Tree for HORMAD2-AS1 (if available)

No data available for Orthologs for HORMAD2-AS1 Gene

Paralogs for HORMAD2-AS1 Gene

No data available for Paralogs for HORMAD2-AS1 Gene

Variants for HORMAD2-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for HORMAD2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HORMAD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv761n67 CNV gain 20364138
dgv838e214 CNV gain 21293372
esv2669796 CNV deletion 23128226
esv3307560 CNV mobile element insertion 20981092
esv3441917 CNV insertion 20981092
esv3647554 CNV loss 21293372
esv3647555 CNV loss 21293372
nsv1110864 OTHER inversion 24896259
nsv3592 CNV insertion 18451855
nsv507930 OTHER sequence alteration 20534489
nsv507931 OTHER sequence alteration 20534489
nsv819812 CNV gain 19587683
nsv829165 CNV gain 20364138
nsv829168 CNV gain 20364138
nsv964619 CNV duplication 23825009

Additional Variant Information for HORMAD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HORMAD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HORMAD2-AS1 Gene

Disorders for HORMAD2-AS1 Gene

Additional Disease Information for HORMAD2-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for HORMAD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HORMAD2-AS1 Gene

Publications for HORMAD2-AS1 Gene

  1. Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci. (PMID: 25144376) Mirza AH … Pociot F (PloS one 2014) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. (PMID: 22197929) Yu XQ … Liu JJ (Nature genetics 2011) 3

ExternalLinks

View latest publications for HORMAD2-AS1 gene in Mastermind

Products for HORMAD2-AS1 Gene

Sources for HORMAD2-AS1 Gene