Aliases for HOMER3-AS1 Gene

Subcategory (RNA class) for HOMER3-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for HOMER3-AS1 Gene

  • HOMER3 Antisense RNA 1 2 3 5
  • HOMER3-AS1 2 168
  • NONHSAG025157 92

External Ids for HOMER3-AS1 Gene

Previous GeneCards Identifiers for HOMER3-AS1 Gene

  • GC19P020532
  • GC19P020680
  • GC19P021012
  • GC19P019699
  • GC19P020080
  • GC19P020394

Summaries for HOMER3-AS1 Gene

GeneCards Summary for HOMER3-AS1 Gene

HOMER3-AS1 (HOMER3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HOMER3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HOMER3-AS1 Gene

Genomics for HOMER3-AS1 Gene

GeneHancer (GH) Regulatory Elements for HOMER3-AS1 Gene

Promoters and enhancers for HOMER3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J018939 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 535.8 +0.5 466 3 CTCF NRF1 USF1 ZNF10 GABPA ZBTB26 HES1 ZBTB7A PRPF4 EZH2 HOMER3-AS1 HOMER3 lnc-COPE-2 MAU2
GH19J019899 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 6.1 +961.3 961298 3.7 EP300 SIN3A NRF1 USF1 SP1 GTF2E2 JUND FOS ZFX POLR2A ZNF93 lnc-ZNF93-1 ZNF506 ZNF101 SUGP2 ATP13A1 ENSG00000274800 HOMER3-AS1 ENSG00000267419 ENSG00000273791
GH19J018846 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 5.7 -91.5 -91475 5.2 CTCF REST GABPA RELA RAD21 TRIM22 SMC3 MXI1 BCL11A NR2F2 HSALNG0124664 COMP REX1BD ENSG00000269694 HOMER3-AS1 UPF1
GH19J018839 Enhancer 1.1 ENCODE dbSUPER 5.7 -100.2 -100161 1.6 FOXK2 POLR2G NCOR1 ZIC2 KDM6A TCF7 ZBTB25 RCOR1 TGIF2 ZBTB7A COMP REX1BD HOMER3-AS1 HSALNG0124664 UPF1
GH19J018951 Enhancer 0.9 Ensembl ENCODE 5.4 +12.0 12028 2.4 ZNF623 RBM25 NR2F2 KDM1A CEBPG SAP130 BCOR SMAD4 ZMYM3 RCOR1 NR2C2AP HOMER3-AS1 RF00017-2903 lnc-HOMER3-1 RN7SL70P HOMER3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HOMER3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOMER3-AS1 Gene

Genomic Locations for HOMER3-AS1 Gene
chr19:18,940,235-18,947,452
(GRCh38/hg38)
Size:
7,218 bases
Orientation:
Plus strand

Genomic View for HOMER3-AS1 Gene

Genes around HOMER3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOMER3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOMER3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOMER3-AS1 Gene

Proteins for HOMER3-AS1 Gene

Post-translational modifications for HOMER3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOMER3-AS1 Gene

Domains & Families for HOMER3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HOMER3-AS1 Gene

Function for HOMER3-AS1 Gene

Phenotypes From GWAS Catalog for HOMER3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOMER3-AS1 Gene

Localization for HOMER3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOMER3-AS1 Gene

Pathways & Interactions for HOMER3-AS1 Gene

PathCards logo

SuperPathways for HOMER3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HOMER3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HOMER3-AS1 Gene

Drugs & Compounds for HOMER3-AS1 Gene

No Compound Related Data Available

Transcripts for HOMER3-AS1 Gene

mRNA/cDNA for HOMER3-AS1 Gene

8 RNACentral transcripts :
2 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for HOMER3-AS1 Gene

No ASD Table

Relevant External Links for HOMER3-AS1 Gene

GeneLoc Exon Structure for
HOMER3-AS1

Expression for HOMER3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOMER3-AS1 Gene

Orthologs for HOMER3-AS1 Gene

Evolution for HOMER3-AS1 Gene

ENSEMBL:
Gene Tree for HOMER3-AS1 (if available)
TreeFam:
Gene Tree for HOMER3-AS1 (if available)

No data available for Orthologs for HOMER3-AS1 Gene

Paralogs for HOMER3-AS1 Gene

No data available for Paralogs for HOMER3-AS1 Gene

Variants for HOMER3-AS1 Gene

Additional dbSNP identifiers (rs#s) for HOMER3-AS1 Gene

Additional Variant Information for HOMER3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOMER3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOMER3-AS1 Gene

Disorders for HOMER3-AS1 Gene

Additional Disease Information for HOMER3-AS1

No disorders were found for HOMER3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOMER3-AS1 Gene

Publications for HOMER3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

No data available for Mastermind for HOMER3-AS1 Gene

Products for HOMER3-AS1 Gene

Sources for HOMER3-AS1 Gene