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Aliases for HNRNPA3P1 Gene

Aliases for HNRNPA3P1 Gene

  • Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1 2 3 5
  • Heterogeneous Nuclear Ribonucleoprotein A3 2
  • HNRPA3P1 3
  • D10S102 3
  • HNRPA3 3
  • FBRNP 3

External Ids for HNRNPA3P1 Gene

Previous HGNC Symbols for HNRNPA3P1 Gene

  • HNRPA3
  • HNRPA3P1

Previous GeneCards Identifiers for HNRNPA3P1 Gene

  • GC10M043602
  • GC10M044282

Summaries for HNRNPA3P1 Gene

Entrez Gene Summary for HNRNPA3P1 Gene

  • This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparent transcribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. [provided by RefSeq, Jul 2008]

GeneCards Summary for HNRNPA3P1 Gene

HNRNPA3P1 (Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1) is a Pseudogene. Among its related pathways are mRNA Splicing - Major Pathway.

Additional gene information for HNRNPA3P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNRNPA3P1 Gene

Genomics for HNRNPA3P1 Gene

GeneHancer (GH) Regulatory Elements for HNRNPA3P1 Gene

Promoters and enhancers for HNRNPA3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I043790 Promoter 0.5 EPDnew 550.8 0.0 -30 0.1 HNRNPA3P1 LINC00619 LOC105378275
GH10I043392 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 44.4 +388.7 388728 18.3 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 HNRNPF EIF3LP2 BMS1 ZNF32-AS2 HNRNPA3P1 ZNF37BP ZNF33B ZNF32-AS1 ZNF32 LOC105378272
GH10I043451 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE 12.2 +336.0 336011 5.8 HDGF FOXA2 PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 LOC105378272 HNRNPF HNRNPA3P1 RNU7-193P ZNF487
GH10I044752 Enhancer 1.2 Ensembl ENCODE 19.3 -962.6 -962573 1.2 PKNOX1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF213 KLF7 FOS ZNF214 WASHC2C FAM21FP HNRNPA3P1 AGAP10P TMEM72-AS1 CEP164P1 ENSG00000229116 C10orf25 ZFAND4 GC10P044773
GH10I043385 Enhancer 0.9 ENCODE dbSUPER 20.5 +405.7 405679 0 HNRNPUL1 NFATC3 MZF1 ZNF48 POLR2B CTBP1 MTA3 E2F8 EGR1 POLR2A HNRNPF HNRNPA3P1 EIF3LP2 RASGEF1A BMS1 PIR56810 FXYD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HNRNPA3P1 gene promoter:

Genomic Locations for HNRNPA3P1 Gene

Genomic Locations for HNRNPA3P1 Gene
chr10:43,787,412-43,790,417
(GRCh38/hg38)
Size:
3,006 bases
Orientation:
Minus strand
chr10:44,282,860-44,285,865
(GRCh37/hg19)

Genomic View for HNRNPA3P1 Gene

Genes around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNRNPA3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNRNPA3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNRNPA3P1 Gene

Proteins for HNRNPA3P1 Gene

Post-translational modifications for HNRNPA3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNRNPA3P1 Gene

Domains & Families for HNRNPA3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNRNPA3P1 Gene

Function for HNRNPA3P1 Gene

Phenotypes for HNRNPA3P1 Gene

GenomeRNAi human phenotypes for HNRNPA3P1:
genes like me logo Genes that share phenotypes with HNRNPA3P1: view

Animal Model Products

miRNA for HNRNPA3P1 Gene

miRTarBase miRNAs that target HNRNPA3P1

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HNRNPA3P1 Gene

Localization for HNRNPA3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNRNPA3P1 Gene

Pathways & Interactions for HNRNPA3P1 Gene

SuperPathways for HNRNPA3P1 Gene

SuperPathway Contained pathways
1 mRNA Splicing - Major Pathway
genes like me logo Genes that share pathways with HNRNPA3P1: view

Pathways by source for HNRNPA3P1 Gene

1 BioSystems pathway for HNRNPA3P1 Gene

Interacting Proteins for HNRNPA3P1 Gene

Gene Ontology (GO) - Biological Process for HNRNPA3P1 Gene

None

No data available for SIGNOR curated interactions for HNRNPA3P1 Gene

Drugs & Compounds for HNRNPA3P1 Gene

No Compound Related Data Available

Transcripts for HNRNPA3P1 Gene

mRNA/cDNA for HNRNPA3P1 Gene

(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNRNPA3P1 Gene

Heterogeneous nuclear ribonucleoprotein A3 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HNRNPA3P1 Gene

No ASD Table

Relevant External Links for HNRNPA3P1 Gene

GeneLoc Exon Structure for
HNRNPA3P1
ECgene alternative splicing isoforms for
HNRNPA3P1

Expression for HNRNPA3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNRNPA3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HNRNPA3P1 Gene:

HNRNPA3P1

SOURCE GeneReport for Unigene cluster for HNRNPA3P1 Gene:

Hs.632956
genes like me logo Genes that share expression patterns with HNRNPA3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNRNPA3P1 Gene

Orthologs for HNRNPA3P1 Gene

Evolution for HNRNPA3P1 Gene

ENSEMBL:
Gene Tree for HNRNPA3P1 (if available)
TreeFam:
Gene Tree for HNRNPA3P1 (if available)

No data available for Orthologs for HNRNPA3P1 Gene

Paralogs for HNRNPA3P1 Gene

No data available for Paralogs for HNRNPA3P1 Gene

Variants for HNRNPA3P1 Gene

Sequence variations from dbSNP and Humsavar for HNRNPA3P1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000119716 -- 43,792,131(-) C/A upstream_transcript_variant
rs1000210144 -- 43,791,009(-) T/A upstream_transcript_variant
rs1000540909 -- 43,792,212(-) C/T upstream_transcript_variant
rs1000571802 -- 43,792,073(-) T/A upstream_transcript_variant
rs1002012350 -- 43,789,519(-) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HNRNPA3P1 Gene

Variant ID Type Subtype PubMed ID
nsv947899 CNV duplication 23825009

Additional Variant Information for HNRNPA3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNRNPA3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNRNPA3P1 Gene

Disorders for HNRNPA3P1 Gene

Additional Disease Information for HNRNPA3P1

No disorders were found for HNRNPA3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNRNPA3P1 Gene

Publications for HNRNPA3P1 Gene

  1. Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). (PMID: 8101480) Takiguchi S … Nakamura Y (Cytogenetics and cell genetics 1993) 2 3 58
  2. Genome-wide association study link novel loci to endometriosis. (PMID: 23472165) Albertsen HM … Ward K (PloS one 2013) 3 58
  3. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. (PMID: 21378990) Schunkert H … Samani NJ (Nature genetics 2011) 44 58
  4. Network organization of the human autophagy system. (PMID: 20562859) Behrends C … Harper JW (Nature 2010) 3 58
  5. Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. (PMID: 20716340) Boukakis G … Guialis A (BMC cancer 2010) 3 58

Products for HNRNPA3P1 Gene

Sources for HNRNPA3P1 Gene

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