Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3 5
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • HNF1A-AS1 2 170
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • HSALNG0094549 169
  • NONHSAG012534 94
  • NCRNA00262 3
  • C12orf27 3
  • HAS1 3

External Ids for HNF1A-AS1 Gene

Previous HGNC Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Previous GeneCards Identifiers for HNF1A-AS1 Gene

  • GC12M121406
  • GC12M120944
  • GC12M120965
  • GC12M120987

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HNF1A-AS1 include Esophagus Adenocarcinoma and Adenocarcinoma.

Rfam classification for HNF1A-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for HNF1A-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

GeneHancer (GH) Regulatory Elements for HNF1A-AS1 Gene

Promoters and enhancers for HNF1A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HNF1A-AS1 Gene

Genomic Locations for HNF1A-AS1 Gene
chr12:120,888,869-120,980,965
(GRCh38/hg38)
Size:
92,097 bases
Orientation:
Minus strand
chr12:121,406,416-121,418,768
(GRCh37/hg19)
Size:
12,353 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains & Families for HNF1A-AS1 Gene

Gene Families for HNF1A-AS1 Gene

genes like me logo Genes that share domains with HNF1A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

Phenotypes From GWAS Catalog for HNF1A-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene

Localization for HNF1A-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HNF1A-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

Pathways & Interactions for HNF1A-AS1 Gene

PathCards logo

SuperPathways for HNF1A-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HNF1A-AS1 Gene

Drugs & Compounds for HNF1A-AS1 Gene

No Compound Related Data Available

Transcripts for HNF1A-AS1 Gene

mRNA/cDNA for HNF1A-AS1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(20) RNACentral transcripts :
(7) NONCODE transcripts :
(18) LNCipedia transcripts :
(7) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

No ASD Table

Relevant External Links for HNF1A-AS1 Gene

GeneLoc Exon Structure for
HNF1A-AS1
ECgene alternative splicing isoforms for
HNF1A-AS1

Expression for HNF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNF1A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).

SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:

Hs.612351
genes like me logo Genes that share expression patterns with HNF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF1A-AS1 Gene

Orthologs for HNF1A-AS1 Gene

Evolution for HNF1A-AS1 Gene

ENSEMBL:
Gene Tree for HNF1A-AS1 (if available)
TreeFam:
Gene Tree for HNF1A-AS1 (if available)

No data available for Orthologs for HNF1A-AS1 Gene

Paralogs for HNF1A-AS1 Gene

No data available for Paralogs for HNF1A-AS1 Gene

Variants for HNF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1001507405 -- 120,971,096(-) C/T non_coding_transcript_variant
rs1002164154 -- 120,972,021(-) T/C/G non_coding_transcript_variant
rs1002261600 -- 120,971,772(-) C/G non_coding_transcript_variant
rs1003692606 -- 120,969,476(-) T/C downstream_transcript_variant
rs1004204738 -- 120,974,094(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv521928 CNV gain 19592680

Additional Variant Information for HNF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene

Disorders for HNF1A-AS1 Gene

MalaCards: The human disease database

(12) MalaCards diseases for HNF1A-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
esophagus adenocarcinoma
  • oesophageal adenocarcinoma
adenocarcinoma
  • adenocarcinomas
squamous cell carcinoma
  • epidermoid carcinoma
bladder cancer
  • bladder cancer, somatic
nasopharyngeal carcinoma
  • npc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for HNF1A-AS1

genes like me logo Genes that share disorders with HNF1A-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene

Publications for HNF1A-AS1 Gene

  1. Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA. (PMID: 28943452) Fang C … Yan D (Cancer letters 2017) 2 3 56
  2. The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y … Song Y (Oncotarget 2015) 2 3 56
  3. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X … Mori Y (Gut 2014) 2 3 56
  4. EGR1-Mediated Transcription of lncRNA-HNF1A-AS1 Promotes Cell-Cycle Progression in Gastric Cancer. (PMID: 30185552) Liu HT … Gao P (Cancer research 2018) 3 56
  5. The HNF1α-regulated lncRNA HNF1A-AS1 reverses the malignancy of hepatocellular carcinoma by enhancing the phosphatase activity of SHP-1. (PMID: 29466992) Ding CH … Xie WF (Molecular cancer 2018) 3 56

Products for HNF1A-AS1 Gene

Sources for HNF1A-AS1 Gene