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Aliases for HNF1A-AS1 Gene
Subcategory (RNA class) for HNF1A-AS1 Gene
lncRNA
Quality Score for this RNA gene is
15
Aliases for HNF1A-AS1 Gene
External Ids for HNF1A-AS1 Gene
- HGNC: 26785
- Entrez Gene: 283460
- Ensembl: ENSG00000241388
Previous HGNC Symbols for HNF1A-AS1 Gene
- C12orf27
- NCRNA00262
Previous GeneCards Identifiers for HNF1A-AS1 Gene
- GC12M121406
- GC12M120944
- GC12M120965
- GC12M120987
Summaries for HNF1A-AS1 Gene
GeneCards Summary for HNF1A-AS1 Gene
HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HNF1A-AS1 include Esophagus Adenocarcinoma and Adenocarcinoma.
Rfam classification for HNF1A-AS1 Gene
-
Metazoan signal recognition particle RNA
Additional gene information for HNF1A-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HNF1A-AS1 Gene
Genomics for HNF1A-AS1 Gene
GeneHancer (GH) Regulatory Elements for HNF1A-AS1 Gene
Promoters and enhancers for HNF1A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for HNF1A-AS1 Gene
Genomic Locations for HNF1A-AS1 Gene
- chr12:120,888,869-120,980,965
- (GRCh38/hg38)
- Size:
- 92,097 bases
- Orientation:
- Minus strand
- chr12:121,406,416-121,418,768
- (GRCh37/hg19)
- Size:
- 12,353 bases
- Orientation:
- Minus strand
Genomic View for HNF1A-AS1 Gene
Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q24.31 by HGNC
- 12q24.31 by Entrez Gene
- 12q24.31 by Ensembl
HNF1A-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HNF1A-AS1 Gene
Proteins for HNF1A-AS1 Gene
Post-translational modifications for HNF1A-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HNF1A-AS1
- Origene Custom Protein Services for HNF1A-AS1
No data available for DME Specific Peptides for HNF1A-AS1 Gene
Domains & Families for HNF1A-AS1 Gene
Gene Families for HNF1A-AS1 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene
Function for HNF1A-AS1 Gene
Phenotypes From GWAS Catalog for HNF1A-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for HNF1A-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HNF1A-AS1
- genomics-online: gRNA clones - Search results for available HNF1A-AS1 gene related products
- Applied Biological Materials (abm): CRISPR Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * HNF1A-AS1 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HNF1A-AS1
- genomics-online: shRNA clones - Search results for available HNF1A-AS1 gene related products
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HNF1A-AS1
- genomics-online: cdna clones - Search results for available HNF1A-AS1 gene related products
- orf clones - Search results for available HNF1A-AS1 gene related products
- Applied Biological Materials (abm): Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * HNF1A-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene
Localization for HNF1A-AS1 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene
Transcripts for HNF1A-AS1 Gene
mRNA/cDNA for HNF1A-AS1 Gene
- (1) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000619441 343 bps (ENST00000619441.1)
- ENST00000647473 1144 bps (ENST00000647473.1)
- ENST00000646404 557 bps (ENST00000646404.1)
- ENST00000537361 659 bps (ENST00000537361.1)
- ENST00000539163 2455 bps (ENST00000539163.1)
- (20) RNACentral transcripts :
- (7) NONCODE transcripts :
- (18) LNCipedia transcripts :
- (7) LncBook transcripts :
CRISPR Products
- Browse CRISPR knockouts for HNF1A-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HNF1A-AS1
- genomics-online: gRNA clones - Search results for available HNF1A-AS1 gene related products
- Applied Biological Materials (abm): CRISPR Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * HNF1A-AS1 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HNF1A-AS1
- genomics-online: shRNA clones - Search results for available HNF1A-AS1 gene related products
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HNF1A-AS1
- genomics-online: cdna clones - Search results for available HNF1A-AS1 gene related products
- orf clones - Search results for available HNF1A-AS1 gene related products
- Applied Biological Materials (abm): Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * HNF1A-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for HNF1A-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene
This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).
SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:
Hs.612351Primer Products
- genomics-online: primer clones - Search results for available HNF1A-AS1 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF1A-AS1 Gene
Orthologs for HNF1A-AS1 Gene
No data available for Orthologs for HNF1A-AS1 Gene
Paralogs for HNF1A-AS1 Gene
No data available for Paralogs for HNF1A-AS1 Gene
Variants for HNF1A-AS1 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001507405 | -- | 120,971,096(-) | C/T | non_coding_transcript_variant | |
| rs1002164154 | -- | 120,972,021(-) | T/C/G | non_coding_transcript_variant | |
| rs1002261600 | -- | 120,971,772(-) | C/G | non_coding_transcript_variant | |
| rs1003692606 | -- | 120,969,476(-) | T/C | downstream_transcript_variant | |
| rs1004204738 | -- | 120,974,094(-) | C/A | upstream_transcript_variant |
Additional Variant Information for HNF1A-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HNF1A-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene
Disorders for HNF1A-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| esophagus adenocarcinoma |
|
|
| adenocarcinoma |
|
|
| squamous cell carcinoma |
|
|
| bladder cancer |
|
|
| nasopharyngeal carcinoma |
|
Search HNF1A-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for HNF1A-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene
Publications for HNF1A-AS1 Gene
- Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA. (PMID: 28943452) Fang C … Yan D (Cancer letters 2017) 2 3 56
- The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y … Song Y (Oncotarget 2015) 2 3 56
- Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X … Mori Y (Gut 2014) 2 3 56
- EGR1-Mediated Transcription of lncRNA-HNF1A-AS1 Promotes Cell-Cycle Progression in Gastric Cancer. (PMID: 30185552) Liu HT … Gao P (Cancer research 2018) 3 56
- The HNF1α-regulated lncRNA HNF1A-AS1 reverses the malignancy of hepatocellular carcinoma by enhancing the phosphatase activity of SHP-1. (PMID: 29466992) Ding CH … Xie WF (Molecular cancer 2018) 3 56
Products for HNF1A-AS1 Gene
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- Custom Assay Services
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- Lentiviral ORF Clones
- antibodies-online: Search results for available HNF1A-AS1 related products ranked by validation data
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- orf clones - Search results for available HNF1A-AS1 gene related products
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Sources for HNF1A-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource