Aliases for HNF1A-AS1 Gene
Subcategory (RNA class) for HNF1A-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
13
Aliases for HNF1A-AS1 Gene
External Ids for HNF1A-AS1 Gene
- HGNC: 26785
- Entrez Gene: 283460
- Ensembl: ENSG00000241388
Previous HGNC Symbols for HNF1A-AS1 Gene
- C12orf27
- NCRNA00262
Previous GeneCards Identifiers for HNF1A-AS1 Gene
- GC12M121406
Summaries for HNF1A-AS1 Gene
GeneCards Summary for HNF1A-AS1 Gene
HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HNF1A-AS1 include Esophagus Adenocarcinoma and Adenocarcinoma.
Additional gene information for HNF1A-AS1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene
Genomics for HNF1A-AS1 Gene
GeneHancer (GH) Regulatory Elements for HNF1A-AS1 Gene
Promoters and enhancers for HNF1A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for HNF1A-AS1 Gene
Genomic Locations for HNF1A-AS1 Gene
- chr12:120,941,728-120,980,965
- (GRCh38/hg38)
- Size:
- 39,238 bases
- Orientation:
- Minus strand
- chr12:121,406,416-121,418,768
- (GRCh37/hg19)
- Size:
- 12,353 bases
- Orientation:
- Minus strand
Genomic View for HNF1A-AS1 Gene
Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q24.31 by Entrez Gene
- 12q24.31 by HGNC
- 12q24.31 by Ensembl
HNF1A-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HNF1A-AS1 Gene
Proteins for HNF1A-AS1 Gene
Post-translational modifications for HNF1A-AS1 Gene
No Post-translational modifications
Antibody Products
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Protein Products
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No data available for DME Specific Peptides for HNF1A-AS1 Gene
Domains & Families for HNF1A-AS1 Gene
Gene Families for HNF1A-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene
Function for HNF1A-AS1 Gene
Phenotypes From GWAS Catalog for HNF1A-AS1 Gene
Animal Model Products
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-
CRISPR Products
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- Applied Biological Materials CRISPR for HNF1A-AS1
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
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Clone Products
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene
Localization for HNF1A-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene
Transcripts for HNF1A-AS1 Gene
mRNA/cDNA for HNF1A-AS1 Gene
- (2) Additional mRNA sequences :
- (7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000619441 343 bps (uc058uek.1)
- ENST00000647473 1144 bps
- ENST00000646404 557 bps
- ENST00000537361 659 bps (uc058uel.1)
- ENST00000539163 2455 bps (uc010szm.1)
- (5) RNA Central transcripts :
Unigene Clusters for HNF1A-AS1 Gene
CRISPR Products
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-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
- Origene shrna products in human, mouse, rat for HNF1A-AS1
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Clone Products
- GenScript: Custom all cDNA clones Services for HNF1A-AS1
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- Applied Biological Materials Clones for HNF1A-AS1
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for HNF1A-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene
This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).
SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:
Hs.612351Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF1A-AS1 Gene
Orthologs for HNF1A-AS1 Gene
No data available for Orthologs for HNF1A-AS1 Gene
Paralogs for HNF1A-AS1 Gene
No data available for Paralogs for HNF1A-AS1 Gene
Variants for HNF1A-AS1 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001507405 | -- | 120,971,096(-) | C/T | non_coding_transcript_variant | |
| rs1002164154 | -- | 120,972,021(-) | T/C/G | non_coding_transcript_variant | |
| rs1002261600 | -- | 120,971,772(-) | C/G | non_coding_transcript_variant | |
| rs1003692606 | -- | 120,969,476(-) | T/C | downstream_transcript_variant | |
| rs1004204738 | -- | 120,974,094(-) | C/A | upstream_transcript_variant |
Additional Variant Information for HNF1A-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HNF1A-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene
Disorders for HNF1A-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| esophagus adenocarcinoma |
|
|
| adenocarcinoma |
|
|
| squamous cell carcinoma |
|
|
| bladder cancer |
|
|
| nasopharyngeal carcinoma |
|
Search HNF1A-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for HNF1A-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene
Publications for HNF1A-AS1 Gene
- Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA. (PMID: 28943452) Fang C … Yan D (Cancer letters 2017) 2 3 58
- The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y … Song Y (Oncotarget 2015) 2 3 58
- Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X … Mori Y (Gut 2014) 2 3 58
- The lncRNA HNF1A-AS1 is a negative prognostic factor and promotes tumorigenesis in osteosarcoma. (PMID: 28866868) Cai L … Yang H (Journal of cellular and molecular medicine 2017) 3 58
- Long non-coding RNA HNF1A-AS1 promotes hepatocellular carcinoma cell proliferation by repressing NKD1 and P21 expression. (PMID: 28292020) Wang C … Zhang XY (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 3 58
Products for HNF1A-AS1 Gene
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Sources for HNF1A-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt