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Aliases for HNF1A-AS1 Gene
Subcategory (RNA class) for HNF1A-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for HNF1A-AS1 Gene
External Ids for HNF1A-AS1 Gene
- HGNC: 26785
- Entrez Gene: 283460
- Ensembl: ENSG00000241388
Previous HGNC Symbols for HNF1A-AS1 Gene
- C12orf27
- NCRNA00262
Previous GeneCards Identifiers for HNF1A-AS1 Gene
- GC12M121406
- GC12M120944
- GC12M120965
- GC12M120987
- GC12M120991
- GC12M121014
Summaries for HNF1A-AS1 Gene
GeneCards Summary for HNF1A-AS1 Gene
HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HNF1A-AS1 include Esophagus Adenocarcinoma and Adenocarcinoma.
Rfam classification for HNF1A-AS1 Gene
-
Metazoan signal recognition particle RNA
Additional gene information for HNF1A-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HNF1A-AS1 Gene
Genomics for HNF1A-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for HNF1A-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HNF1A-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for HNF1A-AS1 Gene
Genomic Locations for HNF1A-AS1 Gene
- chr12:120,888,869-120,980,965
- (GRCh38/hg38)
- Size:
- 92,097 bases
- Orientation:
- Minus strand
- chr12:121,406,416-121,418,768
- (GRCh37/hg19)
- Size:
- 12,353 bases
- Orientation:
- Minus strand
Genomic View for HNF1A-AS1 Gene
Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track
HNF1A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q24.31 by HGNC
- 12q24.31 by Entrez Gene
- 12q24.31 by Ensembl
HNF1A-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HNF1A-AS1 Gene
Proteins for HNF1A-AS1 Gene
Post-translational modifications for HNF1A-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
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No data available for DME Specific Peptides for HNF1A-AS1 Gene
Domains & Families for HNF1A-AS1 Gene
Gene Families for HNF1A-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene
Function for HNF1A-AS1 Gene
Phenotypes From GWAS Catalog for HNF1A-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
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miRNA Products
Inhibitory RNA Products
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Clone Products
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No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene
Localization for HNF1A-AS1 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| cytoskeleton | 1 |
| nucleus | 1 |
| cytosol | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene
Transcripts for HNF1A-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for HNF1A-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004BCA96_9606 | lncRNA | 659 | 4 |
Ensembl: ENST00000537361 (view in UCSC) , LncBook: HSALNT0196031, LNCipedia: HNF1A-AS1:2, NONCODE: NONHSAT031258.2, |
| URS00009BA6AF_9606 | lncRNA | 343 | 4 |
Ensembl: ENST00000619441 (view in UCSC) , LncBook: HSALNT0196028, LNCipedia: HNF1A-AS1:3, NONCODE: NONHSAT164114.1, |
| URS000075C27F_9606 | lncRNA | 2455 | 3 |
HGNC: 26785, RefSeq: NR_024345, LNCipedia: HNF1A-AS1:7, |
| URS0000D62DD3_9606 | lncRNA | 1144 | 2 |
Ensembl: ENST00000647473 (view in UCSC) , LNCipedia: HNF1A-AS1:16, |
| URS0000D65417_9606 | lncRNA | 718 | 2 |
Ensembl: ENST00000433033 (view in UCSC) , LNCipedia: HNF1A-AS1:17, |
HNF1A-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for HNF1A-AS1 Gene
- 1 NCBI additional mRNA sequence :
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000539163 2455 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for HNF1A-AS1
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for HNF1A-AS1
miRNA Products
Inhibitory RNA Products
- Origene shrna and RNAi products in human, mouse, rat for HNF1A-AS1
- Browse OriGene Inhibitory RNA Products For HNF1A-AS1
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Clone Products
- Applied Biological Materials (abm): Clones for HNF1A-AS1 - Select products 50% OFF >
- * HNF1A-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for HNF1A-AS1
Relevant External Links for HNF1A-AS1 Gene
- GeneLoc Exon Structure for
- HNF1A-AS1
Expression for HNF1A-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene
This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HNF1A-AS1
SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:
Hs.612351Primer Products
-
OriGene qPCR primer pairs for HNF1A-AS1
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF1A-AS1 Gene
Orthologs for HNF1A-AS1 Gene
No data available for Orthologs for HNF1A-AS1 Gene
Paralogs for HNF1A-AS1 Gene
No data available for Paralogs for HNF1A-AS1 Gene
Variants for HNF1A-AS1 Gene
Additional Variant Information for HNF1A-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HNF1A-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for HNF1A-AS1 Gene
Disorders for HNF1A-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| esophagus adenocarcinoma |
|
|
| adenocarcinoma |
|
|
| squamous cell carcinoma |
|
|
| osteogenic sarcoma |
|
|
| lung cancer susceptibility 3 |
|
Search HNF1A-AS1 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for HNF1A-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene
Publications for HNF1A-AS1 Gene
- Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA. (PMID: 28943452) Fang C … Yan D (Cancer letters 2017) 2 3
- The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y … Song Y (Oncotarget 2015) 2 3
- Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X … Mori Y (Gut 2014) 2 3
- Knockdown of Long Noncoding RNAs Hepatocyte Nuclear Factor 1α Antisense RNA 1 and Hepatocyte Nuclear Factor 4α Antisense RNA 1 Alters Susceptibility of Acetaminophen-Induced Cytotoxicity in HepaRG Cells. (PMID: 32029527) Chen L … Zhong XB (Molecular pharmacology 2020) 3
- EGR1-Mediated Transcription of lncRNA-HNF1A-AS1 Promotes Cell-Cycle Progression in Gastric Cancer. (PMID: 30185552) Liu HT … Gao P (Cancer research 2018) 3
Products for HNF1A-AS1 Gene
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Sources for HNF1A-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB