Aliases for HMMR-AS1 Gene

Subcategory (RNA class) for HMMR-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HMMR-AS1 Gene

  • HMMR Antisense RNA 1 2 3 5
  • HMMR-AS1 2 5 165
  • NONHSAG042138.2 91
  • HSALNG0046325 164

External Ids for HMMR-AS1 Gene

Previous GeneCards Identifiers for HMMR-AS1 Gene

  • GC05M162910

Summaries for HMMR-AS1 Gene

GeneCards Summary for HMMR-AS1 Gene

HMMR-AS1 (HMMR Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HMMR-AS1 include Breast Cancer.

Additional gene information for HMMR-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMMR-AS1 Gene

Genomics for HMMR-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMMR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J163457 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 +33.4 33433 6 SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 RFX1 LEF1 NUDCD2 HMMR lnc-GABRB2-6 CCNG1 MAT2B HMMR-AS1
GH05J163436 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.1 +55.8 55782 4.3 BRCA1 ARHGAP35 SP1 CREB1 GATAD2A PRDM10 ZNF629 REST IKZF1 ZNF692 CCNG1 ENSG00000254186 LOC105377700 lnc-CCNG1-1 NUDCD2 HMMR HMMR-AS1 MN298233
GH05J163434 Enhancer 1 Ensembl ENCODE 10.1 +59.4 59357 1 LEF1 IKZF1 MTA2 ZNF24 HDAC1 SOX6 MCM7 MTA3 CTBP1 FOXK2 HMMR NUDCD2 HMMR-AS1 CCNG1 ENSG00000254186 LOC105377700 piR-42694-131
GH05J163467 Enhancer 0.4 Ensembl 11.8 +26.3 26257 1.2 PRDM10 GATA3 TCF7L2 GATA2 MAT2B HMMR-AS1 CCNG1 NUDCD2 HMMR
GH05J163543 Enhancer 0.2 Ensembl 10.5 -49.8 -49843 1 HMMR-AS1 AB372781-004 MN298114-191 MAT2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMMR-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMMR-AS1 Gene

Genomic Locations for HMMR-AS1 Gene
chr5:163,482,603-163,494,058
(GRCh38/hg38)
Size:
11,456 bases
Orientation:
Minus strand
chr5:162,910,071-162,921,064
(GRCh37/hg19)
Size:
10,994 bases
Orientation:
Minus strand

Genomic View for HMMR-AS1 Gene

Genes around HMMR-AS1 on UCSC Golden Path with GeneCards custom track
HMMR-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HMMR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMMR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMMR-AS1 Gene

Proteins for HMMR-AS1 Gene

Post-translational modifications for HMMR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMMR-AS1 Gene

Domains & Families for HMMR-AS1 Gene

Gene Families for HMMR-AS1 Gene

genes like me logo Genes that share domains with HMMR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMMR-AS1 Gene

Function for HMMR-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMMR-AS1 Gene

Localization for HMMR-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HMMR-AS1 gene
Compartment Confidence
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMMR-AS1 Gene

Pathways & Interactions for HMMR-AS1 Gene

PathCards logo

SuperPathways for HMMR-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMMR-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMMR-AS1 Gene

Drugs & Compounds for HMMR-AS1 Gene

No Compound Related Data Available

Transcripts for HMMR-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HMMR-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C0A7_9606 lncRNA 1269 5

HGNC: 49149,

RefSeq: NR_109892,

LncBook: HSALNT0097120,

LNCipedia: HMMR-AS1:2,

NONCODE: NONHSAT104909.2,

URS0000477BD8_9606 lncRNA 800 4

Ensembl: ENST00000521666 (view in UCSC) ,

LncBook: HSALNT0097121,

LNCipedia: HMMR-AS1:3,

NONCODE: NONHSAT104910.2,

URS00005F83E7_9606 lncRNA 697 2

Ensembl: ENST00000514724 (view in UCSC) ,

LNCipedia: HMMR-AS1:1,

URS0000EBEE19_9606 lncRNA 1273 1

LncBook: HSALNT0289437,

HMMR-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for HMMR-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for HMMR-AS1 Gene

No ASD Table

Relevant External Links for HMMR-AS1 Gene

GeneLoc Exon Structure for
HMMR-AS1

Expression for HMMR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMMR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HMMR-AS1 Gene

This gene is overexpressed in Testis (x23.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HMMR-AS1

genes like me logo Genes that share expression patterns with HMMR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMMR-AS1 Gene

Orthologs for HMMR-AS1 Gene

Evolution for HMMR-AS1 Gene

ENSEMBL:
Gene Tree for HMMR-AS1 (if available)
TreeFam:
Gene Tree for HMMR-AS1 (if available)

No data available for Orthologs for HMMR-AS1 Gene

Paralogs for HMMR-AS1 Gene

No data available for Paralogs for HMMR-AS1 Gene

Variants for HMMR-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HMMR-AS1 Gene

SNP ID Clinical significance and condition Chr 05 pos Variation AA Info Type
792019 Benign: not provided 163,483,130(-) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
792020 Benign: not provided 163,483,159(-) G/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for HMMR-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for HMMR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1017056 CNV gain 25217958
nsv1029437 CNV gain 25217958
nsv519801 CNV loss 19592680
nsv524084 CNV loss 19592680
nsv830538 CNV gain+loss 17160897

Additional Variant Information for HMMR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMMR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HMMR-AS1 Gene

Disorders for HMMR-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMMR-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast lobular carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with HMMR-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMMR-AS1 Gene

Publications for HMMR-AS1 Gene

  1. Targeting Long Noncoding RNA HMMR-AS1 Suppresses and Radiosensitizes Glioblastoma. (PMID: 29574252) Li J … Wang H (Neoplasia (New York, N.Y.) 2018) 2 3
  2. HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells. (PMID: 27920576) Liu W … Zhang H (Breast cancer (Dove Medical Press) 2016) 2 3
  3. LncRNA HMMR-AS1 promotes proliferation and metastasis of lung adenocarcinoma by regulating MiR-138/sirt6 axis. (PMID: 31128573) Cai Y … Wang J (Aging 2019) 3
  4. Increased expression of long noncoding RNA HMMR-AS1 in epithelial ovarian cancer: an independent prognostic factor. (PMID: 30556852) Chu ZP … Yan P (European review for medical and pharmacological sciences 2018) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for HMMR-AS1 Gene

Sources for HMMR-AS1 Gene