Aliases for HMGN2P46 Gene

Aliases for HMGN2P46 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2 3 5
  • D-PCa-2 2 3 4
  • C15orf21 3 4
  • High Mobility Group Nucleosome-Binding Domain-Containing Protein 2 Pseudogene 46 4
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46 2
  • Putative Dresden Prostate Carcinoma Protein 2 4
  • Chromosome 15 Open Reading Frame 21 2
  • Dresden Prostate Carcinoma 2 3
  • Dresden Prostate Cancer 2 3
  • HMGN2P46 5
  • FLJ39426 2

External Ids for HMGN2P46 Gene

Previous HGNC Symbols for HMGN2P46 Gene

  • C15orf21

Previous GeneCards Identifiers for HMGN2P46 Gene

  • GC15P045804

Summaries for HMGN2P46 Gene

GeneCards Summary for HMGN2P46 Gene

HMGN2P46 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 46) is a Pseudogene. Diseases associated with HMGN2P46 include Prostate Cancer.

Additional gene information for HMGN2P46 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN2P46 Gene

Genomics for HMGN2P46 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGN2P46 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN2P46 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGN2P46 Gene

Genomic Locations for HMGN2P46 Gene
chr15:45,511,136-45,586,290
(GRCh38/hg38)
Size:
75,155 bases
Orientation:
Plus strand
chr15:45,803,334-45,878,488
(GRCh37/hg19)
Size:
75,155 bases
Orientation:
Plus strand

Genomic View for HMGN2P46 Gene

Genes around HMGN2P46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P46 Gene

Proteins for HMGN2P46 Gene

  • Protein details for HMGN2P46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86SG4-DPCA2_HUMAN
    Recommended name:
    Putative Dresden prostate carcinoma protein 2
    Protein Accession:
    Q86SG4
    Secondary Accessions:
    • Q495B5
    • Q86SH8
    • Q8N8I5

    Protein attributes for HMGN2P46 Gene

    Size:
    172 amino acids
    Molecular mass:
    20403 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HMGN2P46 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HMGN2P46 Gene

Post-translational modifications for HMGN2P46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P46 Gene

Domains & Families for HMGN2P46 Gene

Protein Domains for HMGN2P46 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for HMGN2P46 Gene

GenScript: Design optimal peptide antigens:
  • High mobility group nucleosome-binding domain-containing protein 2 pseudogene 46 (DPCA2_HUMAN)
genes like me logo Genes that share domains with HMGN2P46: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN2P46 Gene

Function for HMGN2P46 Gene

genes like me logo Genes that share phenotypes with HMGN2P46: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HMGN2P46

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P46 Gene

Localization for HMGN2P46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P46 Gene

Pathways & Interactions for HMGN2P46 Gene

PathCards logo

SuperPathways for HMGN2P46 Gene

No Data Available

Interacting Proteins for HMGN2P46 Gene

Selected Interacting proteins: Q86SG4-DPCA2_HUMAN for HMGN2P46 Gene via IID

Symbol External ID(s) Details
ELAVL1

Gene Ontology (GO) - Biological Process for HMGN2P46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P46 Gene

Drugs & Compounds for HMGN2P46 Gene

No Compound Related Data Available

Transcripts for HMGN2P46 Gene

mRNA/cDNA for HMGN2P46 Gene

5 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for HMGN2P46

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P46 Gene

No ASD Table

Relevant External Links for HMGN2P46 Gene

GeneLoc Exon Structure for
HMGN2P46

Expression for HMGN2P46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN2P46 Gene

mRNA differential expression in normal tissues according to GTEx for HMGN2P46 Gene

This gene is overexpressed in Prostate (x20.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for HMGN2P46

SOURCE GeneReport for Unigene cluster for HMGN2P46 Gene:

Hs.574240

mRNA Expression by UniProt/SwissProt for HMGN2P46 Gene:

Q86SG4-DPCA2_HUMAN
Tissue specificity: Very high expression in prostate and prostate cancer. Faint expression in other tissues.
genes like me logo Genes that share expression patterns with HMGN2P46: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P46 Gene

Orthologs for HMGN2P46 Gene

Evolution for HMGN2P46 Gene

ENSEMBL:
Gene Tree for HMGN2P46 (if available)
TreeFam:
Gene Tree for HMGN2P46 (if available)

No data available for Orthologs for HMGN2P46 Gene

Paralogs for HMGN2P46 Gene

No data available for Paralogs for HMGN2P46 Gene

Variants for HMGN2P46 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for HMGN2P46 Gene

SNP ID Clinical significance and condition Chr 15 pos Variation AA Info Type
rs8042811 - p.Cys91Arg

Structural Variations from Database of Genomic Variants (DGV) for HMGN2P46 Gene

Variant ID Type Subtype PubMed ID
esv3569553 CNV gain 25503493
esv3892684 CNV gain 25118596
nsv1045556 CNV gain 25217958
nsv1160292 CNV duplication 26073780
nsv984066 CNV duplication 23825009

Additional Variant Information for HMGN2P46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Additional dbSNP identifiers (rs#s) and Variation tolerance for HMGN2P46 Gene

Disorders for HMGN2P46 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HMGN2P46 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with HMGN2P46: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HMGN2P46 Gene

Publications for HMGN2P46 Gene

  1. D-PCa-2: a novel transcript highly overexpressed in human prostate and prostate cancer. (PMID: 15027122) Weigle B … Rieber EP (International journal of cancer 2004) 2 3 4
  2. A new RNA-seq method to detect the transcription and non-coding RNA in prostate cancer. (PMID: 24043589) Zhang XM … Men TY (Pathology oncology research : POR 2014) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  4. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K … Gorospe M (The EMBO journal 2009) 3

Products for HMGN2P46 Gene

Sources for HMGN2P46 Gene