HMGN2P43 Gene (Pseudogene)

High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43

GC17P076345
GIFtS:
5
See more...

Aliases for HMGN2P43 Gene

Aliases for HMGN2P43 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2 3
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2

External Ids for HMGN2P43 Gene

Previous GeneCards Identifiers for HMGN2P43 Gene

  • GC00U931515
  • GC17U901773

Summaries for HMGN2P43 Gene

GeneCards Summary for HMGN2P43 Gene

HMGN2P43 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43) is a Pseudogene.

Additional gene information for HMGN2P43 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN2P43 Gene

Genomics for HMGN2P43 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for HMGN2P43 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076345 Enhancer 0.9 ENCODE 600.7 +0.0 10 0.8 GATAD2A ATF7 IKZF1 NFKBIZ JUND PKNOX1 RXRB MTA1 REST SP1 ENSG00000267518 HMGN2P43 lnc-SPHK1-1 SPHK1 QRICH2 PRPSAP1 AANAT UBE2O
GH17J076340 Enhancer 0.2 FANTOM5 0.7 -4.6 -4630 0.3 SPHK1 QRICH2 UBE2O AANAT HMGN2P43 KR153194-078 PRPSAP1
GH17J076338 Enhancer 0.3 Ensembl 0.4 -6.9 -6928 0.8 ZNF121 KR153194-078 RF00026-456 RNU6-24P SPHK1 QRICH2 UBE2O AANAT PRPSAP1 HMGN2P43
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN2P43 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGN2P43 Gene

Genomic Locations for HMGN2P43 Gene
chr17:76,345,729-76,346,281
(GRCh38/hg38)
Size:
553 bases
Orientation:
Plus strand

Genomic View for HMGN2P43 Gene

Genes around HMGN2P43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P43 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGN2P43 Gene

Proteins for HMGN2P43 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGN2P43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P43 Gene

Domains & Families for HMGN2P43 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN2P43 Gene

Function for HMGN2P43 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P43 Gene

Localization for HMGN2P43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P43 Gene

Pathways & Interactions for HMGN2P43 Gene

PathCards logo

SuperPathways for HMGN2P43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGN2P43 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGN2P43 Gene

Drugs & Compounds for HMGN2P43 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGN2P43 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P43 Gene

No ASD Table

Relevant External Links for HMGN2P43 Gene

GeneLoc Exon Structure for
HMGN2P43

No data available for mRNA/cDNA for HMGN2P43 Gene

Expression for HMGN2P43 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN2P43 Gene

mRNA expression in normal human tissues for HMGN2P43 Gene
mRNA expression by GTEx for HMGN2P43 Gene
genes like me logo Genes that share expression patterns with HMGN2P43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P43 Gene

Orthologs for HMGN2P43 Gene

No data available for Orthologs and Evolution for HMGN2P43 Gene

Paralogs for HMGN2P43 Gene

No data available for Paralogs for HMGN2P43 Gene

Variants for HMGN2P43 Gene

Additional Variant Information for HMGN2P43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P43 Gene

Disorders for HMGN2P43 Gene

No disorders were found for HMGN2P43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P43 Gene

Publications for HMGN2P43 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3

No data available for Mastermind for HMGN2P43 Gene

Products for HMGN2P43 Gene

Sources for HMGN2P43 Gene