Aliases for HMGN2P43 Gene

Aliases for HMGN2P43 Gene

  • High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2 3
  • High-Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43 2

External Ids for HMGN2P43 Gene

Previous GeneCards Identifiers for HMGN2P43 Gene

  • GC00U931515
  • GC17U901773

Summaries for HMGN2P43 Gene

GeneCards Summary for HMGN2P43 Gene

HMGN2P43 (High Mobility Group Nucleosomal Binding Domain 2 Pseudogene 43) is a Pseudogene.

Additional gene information for HMGN2P43 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN2P43 Gene

Genomics for HMGN2P43 Gene

GeneHancer (GH) Regulatory Elements for HMGN2P43 Gene

Promoters and enhancers for HMGN2P43 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076345 Enhancer 0.9 ENCODE 750.6 -0.1 -99 0.8 SMARCE1 NR2F6 CREB1 MIXL1 HLF SP1 CEBPG SMARCA4 SP5 ZNF384 ENSG00000267518 HMGN2P43 lnc-SPHK1-1 SPHK1 QRICH2 PRPSAP1 AANAT UBE2O KR153194-078
GH17J076352 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.7 7654 3.9 SIN3A ZNF24 ZBTB40 SIX5 MLX RBPJ SMARCE1 POLR2A NR2F6 ATF1 PRPSAP1 SRSF2 UNK ENSG00000266980 SPHK1 METTL23 MFSD11 SEPTIN9 QRICH2 TMEM94
GH17J076356 Enhancer 0.9 Ensembl dbSUPER 0.4 +11.2 11163 1.2 ZBTB6 MLX ZNF121 ELF3 POLR2A ZNF24 PPARG RFX1 GATAD2A RXRB piR-38717-005 SPHK1 HMGN2P43 PRPSAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN2P43 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGN2P43 Gene

Genomic Locations for HMGN2P43 Gene
chr17:76,345,838-76,346,081
(GRCh38/hg38)
Size:
244 bases
Orientation:
Plus strand

Genomic View for HMGN2P43 Gene

Genes around HMGN2P43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN2P43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN2P43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN2P43 Gene

Proteins for HMGN2P43 Gene

Post-translational modifications for HMGN2P43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN2P43 Gene

Domains & Families for HMGN2P43 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN2P43 Gene

Function for HMGN2P43 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN2P43 Gene

Localization for HMGN2P43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN2P43 Gene

Pathways & Interactions for HMGN2P43 Gene

PathCards logo

SuperPathways for HMGN2P43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGN2P43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN2P43 Gene

Drugs & Compounds for HMGN2P43 Gene

No Compound Related Data Available

Transcripts for HMGN2P43 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN2P43 Gene

No ASD Table

Relevant External Links for HMGN2P43 Gene

GeneLoc Exon Structure for
HMGN2P43
ECgene alternative splicing isoforms for
HMGN2P43

No data available for mRNA/cDNA for HMGN2P43 Gene

Expression for HMGN2P43 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN2P43 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN2P43 Gene:

HMGN2P43
genes like me logo Genes that share expression patterns with HMGN2P43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN2P43 Gene

Orthologs for HMGN2P43 Gene

No data available for Orthologs and Evolution for HMGN2P43 Gene

Paralogs for HMGN2P43 Gene

No data available for Paralogs for HMGN2P43 Gene

Variants for HMGN2P43 Gene

Additional Variant Information for HMGN2P43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN2P43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN2P43 Gene

Disorders for HMGN2P43 Gene

No disorders were found for HMGN2P43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN2P43 Gene

Publications for HMGN2P43 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 56

No data available for External Links for HMGN2P43 Gene

Products for HMGN2P43 Gene

Sources for HMGN2P43 Gene