HMGN1P30 Gene (Pseudogene)

High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30

GC18M058017
GIFtS:
11

Aliases for HMGN1P30 Gene

Aliases for HMGN1P30 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30 2 3 5
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 30 2

External Ids for HMGN1P30 Gene

Previous GeneCards Identifiers for HMGN1P30 Gene

  • GC18M055687
  • GC18U900644

Summaries for HMGN1P30 Gene

GeneCards Summary for HMGN1P30 Gene

HMGN1P30 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 30) is a Pseudogene.

Additional gene information for HMGN1P30 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN1P30 Gene

Genomics for HMGN1P30 Gene

GeneHancer (GH) Regulatory Elements for HMGN1P30 Gene

Promoters and enhancers for HMGN1P30 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J058017 Enhancer 0.5 Ensembl 750.6 +1.8 1760 0.6 GATAD2A SOX13 JUND TCF7 CREM BCL6 HMGN1P30 lnc-ATP8B1-1 piR-32285-041
GH18J058020 Enhancer 0.3 Ensembl 750.6 -1.4 -1440 0.6 GATA3 IKZF1 HMGN1P30 lnc-ATP8B1-1 lnc-ATP8B1-2
GH18J058041 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.4 -25.6 -25648 7 CTCF FOXA1 SMARCE1 POLR2A CC2D1A NFYC ELF1 HLF DACH1 RAD21 NEDD4L HMGN1P30 NONHSAG023944.2-001
GH18J058220 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 -204.3 -204266 5.6 SIN3A FOXA1 SMARCE1 POLR2A NR2F1 NR2F6 CREB1 HLF L3MBTL2 MNT NEDD4L HMGN1P30 MALT1 RF00017-2687 NONHSAG023944.2-002 LOC105372143
GH18J058193 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 -177.1 -177060 4.7 CTCF RAD21 MLLT1 IKZF1 REST LARP7 ZBTB48 ELF1 USF1 NBN NEDD4L LOC105372143 NONHSAG023944.2-002 HMGN1P30 RF00017-2687
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN1P30 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGN1P30 Gene

Genomic Locations for HMGN1P30 Gene
chr18:58,017,657-58,019,061
(GRCh38/hg38)
Size:
1,405 bases
Orientation:
Minus strand
chr18:55,684,889-55,686,293
(GRCh37/hg19)
Size:
1,405 bases
Orientation:
Minus strand

Genomic View for HMGN1P30 Gene

Genes around HMGN1P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P30 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGN1P30 Gene

Proteins for HMGN1P30 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for HMGN1P30 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HMGN1P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P30 Gene

Domains & Families for HMGN1P30 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN1P30 Gene

Function for HMGN1P30 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for HMGN1P30 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P30 Gene

Localization for HMGN1P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN1P30 Gene

Pathways & Interactions for HMGN1P30 Gene

PathCards logo

SuperPathways for HMGN1P30 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGN1P30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGN1P30 Gene

Drugs & Compounds for HMGN1P30 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGN1P30 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HMGN1P30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P30 Gene

No ASD Table

Relevant External Links for HMGN1P30 Gene

GeneLoc Exon Structure for
HMGN1P30
ECgene alternative splicing isoforms for
HMGN1P30

Expression for HMGN1P30 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGN1P30 Gene

mRNA expression in normal human tissues for HMGN1P30 Gene
mRNA expression by GTEx for HMGN1P30 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for HMGN1P30 Gene



Protein tissue co-expression partners for HMGN1P30 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGN1P30 Gene:

HMGN1P30
genes like me logo Genes that share expression patterns with HMGN1P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P30 Gene

Orthologs for HMGN1P30 Gene

Evolution for HMGN1P30 Gene

ENSEMBL:
Gene Tree for HMGN1P30 (if available)
TreeFam:
Gene Tree for HMGN1P30 (if available)

No data available for Orthologs for HMGN1P30 Gene

Paralogs for HMGN1P30 Gene

No data available for Paralogs for HMGN1P30 Gene

Variants for HMGN1P30 Gene

Additional Variant Information for HMGN1P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P30 Gene

Disorders for HMGN1P30 Gene

No disorders were found for HMGN1P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P30 Gene

Publications for HMGN1P30 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 56
  2. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C … Emili A (Nature 2015) 3 56

No data available for External Links for HMGN1P30 Gene

Products for HMGN1P30 Gene

Sources for HMGN1P30 Gene