Aliases for HMGN1P28 Gene

Aliases for HMGN1P28 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 28 2 3 5
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 28 2
  • HMGN1P28 5

External Ids for HMGN1P28 Gene

Previous GeneCards Identifiers for HMGN1P28 Gene

  • GC00U931259
  • GC17P058929

Summaries for HMGN1P28 Gene

GeneCards Summary for HMGN1P28 Gene

HMGN1P28 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 28) is a Pseudogene.

Additional gene information for HMGN1P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN1P28 Gene

Genomics for HMGN1P28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGN1P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060851 Promoter 0.3 Ensembl 600.7 +0.0 37 0.2 HMGN1P28 lnc-PPM1D-7 BCAS3 TBX2
GH17J060846 Enhancer 0.3 Ensembl 0.7 -4.8 -4763 0.2 SPI1 NCOA3 FJ601666-033 HMGN1P28 BCAS3 TBX2
GH17J060847 Enhancer 0.5 Ensembl 0.4 -6.2 -6163 0.2 GATAD2A CEBPA FOXA2 FOXP1 FOXA1 CEBPG FJ601666-033 HMGN1P28 BCAS3 TBX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN1P28 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGN1P28 Gene

Genomic Locations for HMGN1P28 Gene
chr17:60,851,264-60,851,945
(GRCh38/hg38)
Size:
682 bases
Orientation:
Plus strand
chr17:58,928,743-58,929,106
(GRCh37/hg19)
Size:
364 bases
Orientation:
Plus strand

Genomic View for HMGN1P28 Gene

Genes around HMGN1P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN1P28 Gene

Proteins for HMGN1P28 Gene

Post-translational modifications for HMGN1P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P28 Gene

Domains & Families for HMGN1P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN1P28 Gene

Function for HMGN1P28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P28 Gene

Localization for HMGN1P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN1P28 Gene

Pathways & Interactions for HMGN1P28 Gene

PathCards logo

SuperPathways for HMGN1P28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGN1P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGN1P28 Gene

Drugs & Compounds for HMGN1P28 Gene

No Compound Related Data Available

Transcripts for HMGN1P28 Gene

mRNA/cDNA for HMGN1P28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P28 Gene

No ASD Table

Relevant External Links for HMGN1P28 Gene

GeneLoc Exon Structure for
HMGN1P28

Expression for HMGN1P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN1P28 Gene

genes like me logo Genes that share expression patterns with HMGN1P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P28 Gene

Orthologs for HMGN1P28 Gene

Evolution for HMGN1P28 Gene

ENSEMBL:
Gene Tree for HMGN1P28 (if available)
TreeFam:
Gene Tree for HMGN1P28 (if available)

No data available for Orthologs for HMGN1P28 Gene

Paralogs for HMGN1P28 Gene

No data available for Paralogs for HMGN1P28 Gene

Variants for HMGN1P28 Gene

Additional Variant Information for HMGN1P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P28 Gene

Disorders for HMGN1P28 Gene

No disorders were found for HMGN1P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P28 Gene

Publications for HMGN1P28 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3

No data available for Mastermind for HMGN1P28 Gene

Products for HMGN1P28 Gene

Sources for HMGN1P28 Gene