Aliases for HMGN1P21 Gene

Aliases for HMGN1P21 Gene

  • High Mobility Group Nucleosome Binding Domain 1 Pseudogene 21 2 3
  • High-Mobility Group Nucleosome Binding Domain 1 Pseudogene 21 2

External Ids for HMGN1P21 Gene

Previous GeneCards Identifiers for HMGN1P21 Gene

  • GC11M004009

Summaries for HMGN1P21 Gene

GeneCards Summary for HMGN1P21 Gene

HMGN1P21 (High Mobility Group Nucleosome Binding Domain 1 Pseudogene 21) is a Pseudogene.

Additional gene information for HMGN1P21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGN1P21 Gene

Genomics for HMGN1P21 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGN1P21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J003989 Promoter/Enhancer 0.7 Ensembl ENCODE 600.7 +0.2 187 0.4 ZBTB33 BACH1 EZH2 ENSG00000224555 HMGN1P21 ENSG00000206976 STIM1 ENSG00000229368 STIM1-AS1 RF00017-847 RRM1
GH11J003990 Enhancer 0.5 ENCODE 600.7 -0.5 -463 0.2 RUNX3 BCL11A TBX21 MTA2 ZNF217 ZNF24 MLLT1 ENSG00000224555 HMGN1P21 ENSG00000206976 STIM1 STIM1-AS1 ENSG00000229368 piR-47086-045 RRM1
GH11J003995 Enhancer 0.9 Ensembl ENCODE 0.4 -6.9 -6855 2.3 PRDM10 ZNF629 LEF1 IKZF1 JUND PKNOX1 CTCF DPF2 SOX6 EP300 STIM1 ENSG00000206976 RHOG piR-47086-045 HMGN1P21 RRM1
GH11J003999 Promoter 0.3 Ensembl 0.4 -10.3 -10298 0.6 piR-47086-045 piR-57176-065 HMGN1P21 RRM1 STIM1
GH11J003992 Enhancer 0.2 Ensembl 0.7 -3.3 -3298 0.2 ENSG00000206976 STIM1 RHOG RRM1 HMGN1P21 piR-47086-045
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGN1P21 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGN1P21 Gene

Genomic Locations for HMGN1P21 Gene
chr11:3,988,354-3,989,603
(GRCh38/hg38)
Size:
1,250 bases
Orientation:
Minus strand
chr11:4,009,584-4,010,833
(GRCh37/hg19)
Size:
1,250 bases
Orientation:
Minus strand

Genomic View for HMGN1P21 Gene

Genes around HMGN1P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGN1P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGN1P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGN1P21 Gene

Proteins for HMGN1P21 Gene

Post-translational modifications for HMGN1P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGN1P21 Gene

Domains & Families for HMGN1P21 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGN1P21 Gene

Function for HMGN1P21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGN1P21 Gene

Localization for HMGN1P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGN1P21 Gene

Pathways & Interactions for HMGN1P21 Gene

PathCards logo

SuperPathways for HMGN1P21 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGN1P21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGN1P21 Gene

Drugs & Compounds for HMGN1P21 Gene

No Compound Related Data Available

Transcripts for HMGN1P21 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HMGN1P21 Gene

No ASD Table

Relevant External Links for HMGN1P21 Gene

GeneLoc Exon Structure for
HMGN1P21

No data available for mRNA/cDNA for HMGN1P21 Gene

Expression for HMGN1P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGN1P21 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for HMGN1P21 Gene



Protein tissue co-expression partners for HMGN1P21 Gene

genes like me logo Genes that share expression patterns with HMGN1P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGN1P21 Gene

Orthologs for HMGN1P21 Gene

No data available for Orthologs and Evolution for HMGN1P21 Gene

Paralogs for HMGN1P21 Gene

No data available for Paralogs for HMGN1P21 Gene

Variants for HMGN1P21 Gene

Additional Variant Information for HMGN1P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGN1P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGN1P21 Gene

Disorders for HMGN1P21 Gene

No disorders were found for HMGN1P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGN1P21 Gene

Publications for HMGN1P21 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3

No data available for Mastermind for HMGN1P21 Gene

Products for HMGN1P21 Gene

Sources for HMGN1P21 Gene