Aliases for HMGB3P5 Gene

Aliases for HMGB3P5 Gene

  • High Mobility Group Box 3 Pseudogene 5 2 3 5
  • High Mobility Group Protein B3-Like Protein-Like Pseudogene 3
  • High-Mobility Group Box 3 Pseudogene 5 2

External Ids for HMGB3P5 Gene

Previous GeneCards Identifiers for HMGB3P5 Gene

  • GC10P112211

Summaries for HMGB3P5 Gene

GeneCards Summary for HMGB3P5 Gene

HMGB3P5 (High Mobility Group Box 3 Pseudogene 5) is a Pseudogene.

Additional gene information for HMGB3P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB3P5 Gene

Genomics for HMGB3P5 Gene

GeneHancer (GH) Regulatory Elements for HMGB3P5 Gene

Promoters and enhancers for HMGB3P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110448 Enhancer 0.3 ENCODE 500.7 -2.0 -1970 0.1 RELB HMGB3P5 DUSP5 LOC105378482 HSALNG0080579 ENSG00000273143
GH10J110419 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -24.6 -24604 14 ZNF217 TCF12 FOS TRIM28 KLF4 RFX1 RELA MEF2C HES1 CUX1 DUSP5 HMGB3P5 BBIP1 SHOC2 HSALNG0080579 LOC105378482 ENSG00000273143
GH10J110446 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -3.2 -3196 2 JUND FOS CTCF REST CTBP1 HINFP MYNN GABPA TRIM24 CEBPG DUSP5 ENSG00000273143 HMGB3P5 LOC105378482 HSALNG0080579
GH10J110455 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.0 7996 8 TCF12 ZIC2 ZNF423 EP300 GATAD2B CTBP1 MXI1 RBM25 ZSCAN9 FOXA2 LOC105378482 DUSP5 SMC3 HMGB3P5 ENSG00000273143
GH10J110441 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -8.7 -8704 1.4 BCLAF1 ZNF263 TOE1 CTBP1 POLR2A NFRKB MBD2 ZNF316 ARNT ZNF384 DUSP5 ENSG00000273143 HMGB3P5 LOC105378482 HSALNG0080579
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB3P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB3P5 Gene

Genomic Locations for HMGB3P5 Gene
chr10:110,450,605-110,451,404
(GRCh38/hg38)
Size:
800 bases
Orientation:
Plus strand
chr10:112,210,387-112,210,998
(GRCh37/hg19)
Size:
612 bases
Orientation:
Plus strand

Genomic View for HMGB3P5 Gene

Genes around HMGB3P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P5 Gene

Proteins for HMGB3P5 Gene

Post-translational modifications for HMGB3P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P5 Gene

Domains & Families for HMGB3P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB3P5 Gene

Function for HMGB3P5 Gene

Phenotypes From GWAS Catalog for HMGB3P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P5 Gene

Localization for HMGB3P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB3P5 Gene

Pathways & Interactions for HMGB3P5 Gene

PathCards logo

SuperPathways for HMGB3P5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HMGB3P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB3P5 Gene

Drugs & Compounds for HMGB3P5 Gene

No Compound Related Data Available

Transcripts for HMGB3P5 Gene

mRNA/cDNA for HMGB3P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P5 Gene

No ASD Table

Relevant External Links for HMGB3P5 Gene

GeneLoc Exon Structure for
HMGB3P5

Expression for HMGB3P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P5 Gene

genes like me logo Genes that share expression patterns with HMGB3P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P5 Gene

Orthologs for HMGB3P5 Gene

Evolution for HMGB3P5 Gene

ENSEMBL:
Gene Tree for HMGB3P5 (if available)
TreeFam:
Gene Tree for HMGB3P5 (if available)

No data available for Orthologs for HMGB3P5 Gene

Paralogs for HMGB3P5 Gene

No data available for Paralogs for HMGB3P5 Gene

Variants for HMGB3P5 Gene

Additional Variant Information for HMGB3P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P5 Gene

Disorders for HMGB3P5 Gene

No disorders were found for HMGB3P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P5 Gene

Publications for HMGB3P5 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 54

No data available for Mastermind for HMGB3P5 Gene

Products for HMGB3P5 Gene

Sources for HMGB3P5 Gene