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Aliases for HMGB3P29 Gene

Subcategory (RNA class) for HMGB3P29 Gene

lncRNA

Aliases for HMGB3P29 Gene

  • High Mobility Group Box 3 Pseudogene 29 2 3
  • High-Mobility Group Box 3 Pseudogene 29 2
  • AC010319.1 5

External Ids for HMGB3P29 Gene

ORGUL Members for HMGB3P29 Gene

Previous GeneCards Identifiers for HMGB3P29 Gene

  • GC19M017527

Summaries for HMGB3P29 Gene

GeneCards Summary for HMGB3P29 Gene

HMGB3P29 (High Mobility Group Box 3 Pseudogene 29) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB3P29 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB3P29 Gene

Genomics for HMGB3P29 Gene

GeneHancer (GH) Regulatory Elements for HMGB3P29 Gene

Promoters and enhancers for HMGB3P29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I017418 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -1.6 -1619 2.3 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 MVB12A ENSG00000269053 HMGB3P29 BISPR CHERP LOC100507551 ENSG00000269481
GH19I017411 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +5.4 5350 2.4 PKNOX1 ZIC2 ZNF121 ZNF335 ZFHX2 ZNF316 ZBTB48 SCRT2 PRDM10 ZNF600 BISPR MVB12A SIN3B HMGB3P29 GC19P020268
GH19I017414 Enhancer 0.5 ENCODE 0.8 +3.2 3201 1.6 SCRT1 SP1 SCRT2 TCF7L2 BISPR SIN3B HMGB3P29 ENSG00000269481 MVB12A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB3P29 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB3P29 Gene

Genomic Locations for HMGB3P29 Gene
chr19:17,417,031-17,418,288
(GRCh38/hg38)
Size:
1,258 bases
Orientation:
Minus strand
chr19:17,527,840-17,529,097
(GRCh37/hg19)

Genomic View for HMGB3P29 Gene

Genes around HMGB3P29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P29 Gene

Proteins for HMGB3P29 Gene

Post-translational modifications for HMGB3P29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P29 Gene

Domains & Families for HMGB3P29 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB3P29 Gene

Function for HMGB3P29 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P29 Gene

Localization for HMGB3P29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB3P29 Gene

Pathways & Interactions for HMGB3P29 Gene

SuperPathways for HMGB3P29 Gene

No Data Available

Interacting Proteins for HMGB3P29 Gene

Gene Ontology (GO) - Biological Process for HMGB3P29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB3P29 Gene

Drugs & Compounds for HMGB3P29 Gene

No Compound Related Data Available

Transcripts for HMGB3P29 Gene

mRNA/cDNA for HMGB3P29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P29 Gene

No ASD Table

Relevant External Links for HMGB3P29 Gene

GeneLoc Exon Structure for
HMGB3P29
ECgene alternative splicing isoforms for
HMGB3P29

Expression for HMGB3P29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB3P29 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB3P29 Gene

This gene is overexpressed in Ovary (x4.7) and Spleen (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HMGB3P29 Gene:

HMGB3P29
genes like me logo Genes that share expression patterns with HMGB3P29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P29 Gene

Orthologs for HMGB3P29 Gene

Evolution for HMGB3P29 Gene

ENSEMBL:
Gene Tree for HMGB3P29 (if available)
TreeFam:
Gene Tree for HMGB3P29 (if available)

No data available for Orthologs for HMGB3P29 Gene

Paralogs for HMGB3P29 Gene

No data available for Paralogs for HMGB3P29 Gene

Variants for HMGB3P29 Gene

Additional Variant Information for HMGB3P29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P29 Gene

Disorders for HMGB3P29 Gene

No disorders were found for HMGB3P29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P29 Gene

Publications for HMGB3P29 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB3P29 Gene

Sources for HMGB3P29 Gene

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