Aliases for HMGB3P28 Gene

Aliases for HMGB3P28 Gene

  • High Mobility Group Box 3 Pseudogene 28 2 3
  • High Mobility Group Protein B3-Like Protein-Like Pseudogene 3
  • High Mobility Group Box 3 (HMGB3) Pseudogene 5
  • High-Mobility Group Box 3 Pseudogene 28 2
  • AP001029.3 5

External Ids for HMGB3P28 Gene

Summaries for HMGB3P28 Gene

GeneCards Summary for HMGB3P28 Gene

HMGB3P28 (High Mobility Group Box 3 Pseudogene 28) is a Pseudogene.

Additional gene information for HMGB3P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB3P28 Gene

Genomics for HMGB3P28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGB3P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J012448 Enhancer 0.3 Ensembl 600.7 -1.4 -1414 0.8 MAFF MAFK HMGB3P28 PRELID3A RNU7-129P ENSG00000267199 PSMG2 SPIRE1
GH18J011688 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 10.1 -760.7 -760723 2.2 GATAD2A PRDM10 ZNF629 SOX13 NFKBIZ ZNF692 ZNF174 TARDBP FOXA1 ZNF143 GNAL piR-48209-315 PRELID3A PSMG2 ENSG00000267199 ENSG00000267249 HMGB3P28 CHMP1B
GH18J013445 Enhancer 0.6 dbSUPER 9.8 +995.3 995334 0.4 PHB2 ZSCAN4 KLF9 ZNF207 NONO ZFHX2 ZGPAT PLRG1 NFATC1 EGR2 lnc-RNMT-8 ZNF519 ENSG00000266969 ENSG00000267756 HMGB3P28 LDLRAD4-AS1 LDLRAD4 RNMT
GH18J012438 Enhancer 0.4 Ensembl 0.4 -11.9 -11913 0.6 SCRT2 ZFHX2 EGR2 ENSG00000267199 PRELID3A LOC105371998 HMGB3P28 PSMG2
GH18J012441 Enhancer 0.3 Ensembl 0.4 -8.6 -8614 0.8 RCOR1 CHD2 ENSG00000267199 PRELID3A RNU7-129P LOC105371998 HMGB3P28 PSMG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB3P28 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGB3P28 Gene

Genomic Locations for HMGB3P28 Gene
chr18:12,450,414-12,451,072
(GRCh38/hg38)
Size:
659 bases
Orientation:
Plus strand
chr18:12,450,446-12,451,041
(GRCh37/hg19)
Size:
596 bases
Orientation:
Plus strand

Genomic View for HMGB3P28 Gene

Genes around HMGB3P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB3P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB3P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB3P28 Gene

Proteins for HMGB3P28 Gene

Post-translational modifications for HMGB3P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB3P28 Gene

Domains & Families for HMGB3P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB3P28 Gene

Function for HMGB3P28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB3P28 Gene

Localization for HMGB3P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB3P28 Gene

Pathways & Interactions for HMGB3P28 Gene

PathCards logo

SuperPathways for HMGB3P28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGB3P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB3P28 Gene

Drugs & Compounds for HMGB3P28 Gene

No Compound Related Data Available

Transcripts for HMGB3P28 Gene

mRNA/cDNA for HMGB3P28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB3P28 Gene

No ASD Table

Relevant External Links for HMGB3P28 Gene

GeneLoc Exon Structure for
HMGB3P28

Expression for HMGB3P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB3P28 Gene

genes like me logo Genes that share expression patterns with HMGB3P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB3P28 Gene

Orthologs for HMGB3P28 Gene

Evolution for HMGB3P28 Gene

ENSEMBL:
Gene Tree for HMGB3P28 (if available)
TreeFam:
Gene Tree for HMGB3P28 (if available)

No data available for Orthologs for HMGB3P28 Gene

Paralogs for HMGB3P28 Gene

No data available for Paralogs for HMGB3P28 Gene

Variants for HMGB3P28 Gene

Additional Variant Information for HMGB3P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB3P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB3P28 Gene

Disorders for HMGB3P28 Gene

No disorders were found for HMGB3P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB3P28 Gene

Publications for HMGB3P28 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3

No data available for Mastermind for HMGB3P28 Gene

Products for HMGB3P28 Gene

Sources for HMGB3P28 Gene