Aliases for HMGB1P7 Gene

Aliases for HMGB1P7 Gene

  • High Mobility Group Box 1 Pseudogene 7 2 3 5
  • High-Mobility Group Box 1 Pseudogene 7 2

External Ids for HMGB1P7 Gene

Previous GeneCards Identifiers for HMGB1P7 Gene

  • GC10P032203

Summaries for HMGB1P7 Gene

GeneCards Summary for HMGB1P7 Gene

HMGB1P7 (High Mobility Group Box 1 Pseudogene 7) is a Pseudogene.

Additional gene information for HMGB1P7 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB1P7 Gene

Genomics for HMGB1P7 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P7 Gene

Promoters and enhancers for HMGB1P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J031912 Promoter/Enhancer 1 Ensembl ENCODE 500.7 -0.3 -263 1 FOSL1 EHMT2 TAL1 ZC3H8 HDAC2 DPF2 KDM1A ZEB2 NFIA ARID4B HMGB1P7 lnc-ZEB1-6 ENSG00000206660 KIF5B ARHGAP12 piR-43105-052
GH10J031909 Enhancer 0.4 Ensembl 0.7 -4.5 -4543 0.4 ZNF316 RBM22 JUND MAFK ATF3 HMGB1P7 lnc-ZEB1-6 piR-43105-052 ARHGAP12
GH10J031918 Enhancer 0.6 Ensembl 0.4 +7.8 7757 5.4 ZBTB40 ZSCAN5C KDM1A FOXA2 SRF SMARCA5 ELF1 IKZF1 ZNF146 ZNF18 KIF5B ARHGAP12 HMGB1P7 lnc-ZEB1-12 lnc-ZEB1-6
GH10J031908 Enhancer 0.3 Ensembl 0.4 -5.0 -5042 0.2 JUND ATF3 ARHGAP12 HMGB1P7 lnc-ZEB1-6 piR-43105-052
GH10J031905 Enhancer 0.3 Ensembl 0.4 -7.0 -7042 1 RXRA HMGB1P7 lnc-ZEB1-6 piR-43105-052 ARHGAP12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB1P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P7 Gene

Genomic Locations for HMGB1P7 Gene
chr10:31,913,143-31,913,754
(GRCh38/hg38)
Size:
612 bases
Orientation:
Plus strand
chr10:32,202,071-32,202,682
(GRCh37/hg19)
Size:
612 bases
Orientation:
Plus strand

Genomic View for HMGB1P7 Gene

Genes around HMGB1P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P7 Gene

Proteins for HMGB1P7 Gene

Post-translational modifications for HMGB1P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P7 Gene

Domains & Families for HMGB1P7 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB1P7 Gene

Function for HMGB1P7 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P7 Gene

Localization for HMGB1P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P7 Gene

Pathways & Interactions for HMGB1P7 Gene

PathCards logo

SuperPathways for HMGB1P7 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HMGB1P7 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB1P7 Gene

Drugs & Compounds for HMGB1P7 Gene

No Compound Related Data Available

Transcripts for HMGB1P7 Gene

mRNA/cDNA for HMGB1P7 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P7 Gene

No ASD Table

Relevant External Links for HMGB1P7 Gene

GeneLoc Exon Structure for
HMGB1P7

Expression for HMGB1P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P7 Gene

genes like me logo Genes that share expression patterns with HMGB1P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P7 Gene

Orthologs for HMGB1P7 Gene

Evolution for HMGB1P7 Gene

ENSEMBL:
Gene Tree for HMGB1P7 (if available)
TreeFam:
Gene Tree for HMGB1P7 (if available)

No data available for Orthologs for HMGB1P7 Gene

Paralogs for HMGB1P7 Gene

No data available for Paralogs for HMGB1P7 Gene

Variants for HMGB1P7 Gene

Additional Variant Information for HMGB1P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P7 Gene

Disorders for HMGB1P7 Gene

No disorders were found for HMGB1P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P7 Gene

Publications for HMGB1P7 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 54

No data available for Mastermind for HMGB1P7 Gene

Products for HMGB1P7 Gene

Sources for HMGB1P7 Gene