Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB1P50 Gene

Aliases for HMGB1P50 Gene

  • High Mobility Group Box 1 Pseudogene 50 2 3 5

External Ids for HMGB1P50 Gene

Previous GeneCards Identifiers for HMGB1P50 Gene

  • GC00U936666

Summaries for HMGB1P50 Gene

GeneCards Summary for HMGB1P50 Gene

HMGB1P50 (High Mobility Group Box 1 Pseudogene 50) is a Pseudogene.

Additional gene information for HMGB1P50 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P50 Gene

Genomics for HMGB1P50 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P50 Gene

Promoters and enhancers for HMGB1P50 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049549 Enhancer 0.9 Ensembl ENCODE 600.7 +0.7 675 4.7 CAVIN1 ZNF740 HDAC1 ZNF316 JUN SOX6 JUND EP300 NR2C2 FOSL1 HMGB1P50 ERCC6 PGBD3 ENSG00000235939 GC10P049595
GH10J049567 Enhancer 1 FANTOM5 ENCODE 0.4 +17.6 17598 2.2 RELA CREB1 CEBPB CHD2 JUN RCOR1 JUND MAX MAZ RUNX3 ERCC6 SLC18A3 CHAT PGBD3 HMGB1P50 GC10P049595
GH10J049542 Enhancer 0.7 Ensembl 0.4 -7.8 -7807 2.2 CBFA2T2 BACH1 TRIM24 SMARCA4 DPF2 IKZF1 PKNOX1 ZNF24 ZNF740 HDAC1 CHAT SLC18A3 ERCC6 ENSG00000235939 PGBD3 HMGB1P50
GH10J049593 Enhancer 0.7 Ensembl 0.3 +41.9 41893 0.4 CTCF RAD21 ZNF143 REST TRIM22 EHMT2 GATAD2A DEK SMC3 ELF1 PGBD3 GC10P049595 HMGB1P50
GH10J049594 Enhancer 0.6 Ensembl 0.3 +43.9 43892 1.2 CC2D1A CTCF RAD21 ARID2 IKZF1 ZNF600 REST TRIM22 SMC3 RCOR1 GC10P049595 ERCC6 HMGB1P50
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB1P50 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P50 Gene

Genomic Locations for HMGB1P50 Gene
chr10:49,551,308-49,552,652
(GRCh38/hg38)
Size:
1,345 bases
Orientation:
Plus strand
chr10:50,759,354-50,760,698
(GRCh37/hg19)
Size:
1,345 bases
Orientation:
Plus strand

Genomic View for HMGB1P50 Gene

Genes around HMGB1P50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P50 Gene

Proteins for HMGB1P50 Gene

Post-translational modifications for HMGB1P50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P50 Gene

Domains & Families for HMGB1P50 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P50 Gene

Function for HMGB1P50 Gene

Phenotypes From GWAS Catalog for HMGB1P50 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P50 Gene

Localization for HMGB1P50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P50 Gene

Pathways & Interactions for HMGB1P50 Gene

PathCards logo

SuperPathways for HMGB1P50 Gene

No Data Available

Interacting Proteins for HMGB1P50 Gene

Gene Ontology (GO) - Biological Process for HMGB1P50 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P50 Gene

Drugs & Compounds for HMGB1P50 Gene

No Compound Related Data Available

Transcripts for HMGB1P50 Gene

mRNA/cDNA for HMGB1P50 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P50 Gene

No ASD Table

Relevant External Links for HMGB1P50 Gene

GeneLoc Exon Structure for
HMGB1P50
ECgene alternative splicing isoforms for
HMGB1P50

Expression for HMGB1P50 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P50 Gene:

HMGB1P50
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P50 Gene

Orthologs for HMGB1P50 Gene

Evolution for HMGB1P50 Gene

ENSEMBL:
Gene Tree for HMGB1P50 (if available)
TreeFam:
Gene Tree for HMGB1P50 (if available)

No data available for Orthologs for HMGB1P50 Gene

Paralogs for HMGB1P50 Gene

No data available for Paralogs for HMGB1P50 Gene

Variants for HMGB1P50 Gene

Additional Variant Information for HMGB1P50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P50 Gene

Disorders for HMGB1P50 Gene

No disorders were found for HMGB1P50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P50 Gene

Publications for HMGB1P50 Gene

No publications were found for HMGB1P50 Gene.

No data available for External Links for HMGB1P50 Gene

Products for HMGB1P50 Gene

Sources for HMGB1P50 Gene

Content
Loading form....