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HMGB1P49 Gene(Pseudogene)

High Mobility Group Box 1 Pseudogene 49

GCID:
GC12P027703
GIFtS:
11
Genes Participants
UDN Logo

Aliases for HMGB1P49 Gene

Subcategory (RNA class) for HMGB1P49 Gene

lncRNA

Aliases for HMGB1P49 Gene

  • High Mobility Group Box 1 Pseudogene 49 2 3 5
  • High-Mobility Group Box 1 Pseudogene 49 2

External Ids for HMGB1P49 Gene

ORGUL Members for HMGB1P49 Gene

Previous GeneCards Identifiers for HMGB1P49 Gene

  • GC12P027855

Summaries for HMGB1P49 Gene

GeneCards Summary for HMGB1P49 Gene

HMGB1P49 (High Mobility Group Box 1 Pseudogene 49) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB1P49 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P49 Gene

Genomics for HMGB1P49 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for HMGB1P49 Gene

Promoters and enhancers for HMGB1P49 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I027703 Enhancer 0.9 ENCODE 550.8 +1.6 1585 0.3 FOXA2 ZNF2 ZNF213 ZNF143 ATF7 DEK REST ZNF518A KAT8 NFIL3 ENSG00000256504 HMGB1P49 PPFIBP1 MANSC4 ENSG00000256377
GH12I027330 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 -368.3 -368253 7.4 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 ZNF48 GLIS2 ZNF416 ZNF207 ARNTL2 STK38L TM7SF3 MED21 HMGB1P49 FGFR1OP2 GC12P027317 ARNTL2-AS1
GH12I027709 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 6.5 +8.7 8702 3 HDGF FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ENSG00000256377 MRPS35 MANSC4 C12orf71 KLHL42 MED21 HMGB1P49 ENSG00000252585
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P49 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P49 Gene

Genomic Locations for HMGB1P49 Gene
chr12:27,702,338-27,702,906
(GRCh38/hg38)
Size:
569 bases
Orientation:
Plus strand
chr12:27,855,271-27,855,839
(GRCh37/hg19)

Genomic View for HMGB1P49 Gene

Genes around HMGB1P49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P49 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HMGB1P49 Gene

Proteins for HMGB1P49 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HMGB1P49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P49 Gene

Domains & Families for HMGB1P49 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P49 Gene

Function for HMGB1P49 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P49 Gene

Localization for HMGB1P49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P49 Gene

Pathways & Interactions for HMGB1P49 Gene

SuperPathways for HMGB1P49 Gene

PathCards logo More details on SuperPathways for HMGB1P49
No Data Available

Interacting Proteins for HMGB1P49 Gene

Gene Ontology (GO) - Biological Process for HMGB1P49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P49 Gene

Drugs & Compounds for HMGB1P49 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HMGB1P49 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HMGB1P49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P49 Gene

No ASD Table

Relevant External Links for HMGB1P49 Gene

GeneLoc Exon Structure for
HMGB1P49
ECgene alternative splicing isoforms for
HMGB1P49

Expression for HMGB1P49 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P49 Gene

mRNA expression in normal human tissues for HMGB1P49 Gene
mRNA expression by GTEx for HMGB1P49 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P49 Gene

This gene is overexpressed in Colon - Transverse (x20.1) and Small Intestine - Terminal Ileum (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P49 Gene:

HMGB1P49
genes like me logo Genes that share expression patterns with HMGB1P49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P49 Gene

Orthologs for HMGB1P49 Gene

Evolution for HMGB1P49 Gene

ENSEMBL:
Gene Tree for HMGB1P49 (if available)
TreeFam:
Gene Tree for HMGB1P49 (if available)

No data available for Orthologs for HMGB1P49 Gene

Paralogs for HMGB1P49 Gene

No data available for Paralogs for HMGB1P49 Gene

Variants for HMGB1P49 Gene

Additional Variant Information for HMGB1P49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P49 Gene

Disorders for HMGB1P49 Gene

No disorders were found for HMGB1P49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P49 Gene

Publications for HMGB1P49 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P49 Gene

Sources for HMGB1P49 Gene

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