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Aliases for HMGB1P49 Gene
Aliases for HMGB1P49 Gene
External Ids for HMGB1P49 Gene
- HGNC: 39282
- Entrez Gene: 100420013
- Ensembl: ENSG00000230519
Previous GeneCards Identifiers for HMGB1P49 Gene
- GC12P027855
Summaries for HMGB1P49 Gene
GeneCards Summary for HMGB1P49 Gene
HMGB1P49 (High Mobility Group Box 1 Pseudogene 49) is a Pseudogene.
Additional gene information for HMGB1P49 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB1P49 Gene
Genomics for HMGB1P49 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for HMGB1P49 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J027703 | Enhancer | 1.1 | Ensembl ENCODE | 600.7 | +1.7 | 1670 | 1.2 | RNF2 GATAD2A CTCF TEAD4 JUND FOXA1 ZNF143 REST ZNF24 RAD21 | ENSG00000256504 HMGB1P49 lnc-REP15-1 PPFIBP1 MANSC4 ENSG00000256377 MRPS35 REP15 LOC107984461 | |
| GH12J027709 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE CraniofacialAtlas | 6.5 | +8.7 | 8745 | 3 | ZNF221 SP1 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 TFE3 NFKBIZ ZNF692 | ENSG00000256377 LOC107984461 MRPS35 MANSC4 C12orf71 KLHL42 MED21 HMGB1P49 piR-35674-097 | |
| GH12J027330 | Promoter/Enhancer | 2.4 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 5.2 | -368.3 | -368253 | 7.4 | RNF2 PRDM10 KDM1A POLR2A BACH1 JUND LARP7 STAT3 PRDM1 ZIC2 | ARNTL2 STK38L TM7SF3 MED21 HMGB1P49 FGFR1OP2 MN309174-108 SMCO2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around HMGB1P49 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for HMGB1P49 Gene
Genomic Locations for HMGB1P49 Gene
- chr12:27,702,338-27,702,906
- (GRCh38/hg38)
- Size:
- 569 bases
- Orientation:
- Plus strand
- chr12:27,855,271-27,855,839
- (GRCh37/hg19)
- Size:
- 569 bases
- Orientation:
- Plus strand
Genomic View for HMGB1P49 Gene
Genes around HMGB1P49 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p11.22 by HGNC
- 12p11.22 by Entrez Gene
- 12p11.22 by Ensembl
HMGB1P49 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HMGB1P49 Gene
Proteins for HMGB1P49 Gene
Post-translational modifications for HMGB1P49 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P49
- Origene Custom Protein Services for HMGB1P49
No data available for DME Specific Peptides for HMGB1P49 Gene
Domains & Families for HMGB1P49 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB1P49 Gene
Function for HMGB1P49 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HMGB1P49 - Select products 50% OFF >
- * HMGB1P49 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for HMGB1P49
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P49 Gene
Localization for HMGB1P49 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P49 Gene
Transcripts for HMGB1P49 Gene
mRNA/cDNA for HMGB1P49 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000418882 569 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for HMGB1P49 - Select products 50% OFF >
- * HMGB1P49 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for HMGB1P49
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for HMGB1P49 Gene
- GeneLoc Exon Structure for
- HMGB1P49
Expression for HMGB1P49 Gene
mRNA differential expression in normal tissues according to GTEx for HMGB1P49 Gene
This gene is overexpressed in Colon - Transverse (x20.1) and Small Intestine - Terminal Ileum (x4.8).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P49 Gene
Orthologs for HMGB1P49 Gene
No data available for Orthologs for HMGB1P49 Gene
Paralogs for HMGB1P49 Gene
No data available for Paralogs for HMGB1P49 Gene
Variants for HMGB1P49 Gene
Additional Variant Information for HMGB1P49 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HMGB1P49
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P49 Gene
Disorders for HMGB1P49 Gene
No disorders were found for HMGB1P49 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P49 Gene
Publications for HMGB1P49 Gene
- Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3
No data available for Mastermind for HMGB1P49 Gene
Products for HMGB1P49 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HMGB1P49
- Origene Custom Protein Services for HMGB1P49
- Browse OriGene Inhibitory RNA Products For HMGB1P49
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HMGB1P49
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HMGB1P49
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for HMGB1P49
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for HMGB1P49
- Search GeneCopoeia for miRNA 3'UTR Target clone products for HMGB1P49
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for HMGB1P49
Sources for HMGB1P49 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB