Aliases for HMGB1P49 Gene

Aliases for HMGB1P49 Gene

  • High Mobility Group Box 1 Pseudogene 49 2 3 5
  • High-Mobility Group Box 1 Pseudogene 49 2
  • High-Mobility Group Box 2 Pseudogene 3
  • HMGB1P49 5

External Ids for HMGB1P49 Gene

Previous GeneCards Identifiers for HMGB1P49 Gene

  • GC12P027855

Summaries for HMGB1P49 Gene

GeneCards Summary for HMGB1P49 Gene

HMGB1P49 (High Mobility Group Box 1 Pseudogene 49) is a Pseudogene.

Additional gene information for HMGB1P49 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB1P49 Gene

Genomics for HMGB1P49 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGB1P49 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J027703 Enhancer 1.1 Ensembl ENCODE 600.7 +1.7 1670 1.2 RNF2 GATAD2A CTCF TEAD4 JUND FOXA1 ZNF143 REST ZNF24 RAD21 ENSG00000256504 HMGB1P49 lnc-REP15-1 PPFIBP1 MANSC4 ENSG00000256377 MRPS35 REP15 LOC107984461
GH12J027709 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 6.5 +8.7 8745 3 ZNF221 SP1 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 TFE3 NFKBIZ ZNF692 ENSG00000256377 LOC107984461 MRPS35 MANSC4 C12orf71 KLHL42 MED21 HMGB1P49 piR-35674-097
GH12J027330 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.2 -368.3 -368253 7.4 RNF2 PRDM10 KDM1A POLR2A BACH1 JUND LARP7 STAT3 PRDM1 ZIC2 ARNTL2 STK38L TM7SF3 MED21 HMGB1P49 FGFR1OP2 MN309174-108 SMCO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB1P49 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGB1P49 Gene

Genomic Locations for HMGB1P49 Gene
chr12:27,702,338-27,702,906
(GRCh38/hg38)
Size:
569 bases
Orientation:
Plus strand
chr12:27,855,271-27,855,839
(GRCh37/hg19)
Size:
569 bases
Orientation:
Plus strand

Genomic View for HMGB1P49 Gene

Genes around HMGB1P49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P49 Gene

Proteins for HMGB1P49 Gene

Post-translational modifications for HMGB1P49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P49 Gene

Domains & Families for HMGB1P49 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB1P49 Gene

Function for HMGB1P49 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P49 Gene

Localization for HMGB1P49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P49 Gene

Pathways & Interactions for HMGB1P49 Gene

PathCards logo

SuperPathways for HMGB1P49 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGB1P49 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB1P49 Gene

Drugs & Compounds for HMGB1P49 Gene

No Compound Related Data Available

Transcripts for HMGB1P49 Gene

mRNA/cDNA for HMGB1P49 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P49 Gene

No ASD Table

Relevant External Links for HMGB1P49 Gene

GeneLoc Exon Structure for
HMGB1P49

Expression for HMGB1P49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P49 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P49 Gene

This gene is overexpressed in Colon - Transverse (x20.1) and Small Intestine - Terminal Ileum (x4.8).
genes like me logo Genes that share expression patterns with HMGB1P49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P49 Gene

Orthologs for HMGB1P49 Gene

Evolution for HMGB1P49 Gene

ENSEMBL:
Gene Tree for HMGB1P49 (if available)
TreeFam:
Gene Tree for HMGB1P49 (if available)

No data available for Orthologs for HMGB1P49 Gene

Paralogs for HMGB1P49 Gene

No data available for Paralogs for HMGB1P49 Gene

Variants for HMGB1P49 Gene

Additional Variant Information for HMGB1P49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P49 Gene

Disorders for HMGB1P49 Gene

No disorders were found for HMGB1P49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P49 Gene

Publications for HMGB1P49 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3

No data available for Mastermind for HMGB1P49 Gene

Products for HMGB1P49 Gene

Sources for HMGB1P49 Gene