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Aliases for HMGB1P48 Gene

Aliases for HMGB1P48 Gene

  • High Mobility Group Box 1 Pseudogene 48 2 3 5
  • High-Mobility Group Box 1 Pseudogene 48 2

External Ids for HMGB1P48 Gene

Previous GeneCards Identifiers for HMGB1P48 Gene

  • GC01P045999

Summaries for HMGB1P48 Gene

GeneCards Summary for HMGB1P48 Gene

HMGB1P48 (High Mobility Group Box 1 Pseudogene 48) is a Pseudogene.

Additional gene information for HMGB1P48 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P48 Gene

Genomics for HMGB1P48 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P48 Gene

Promoters and enhancers for HMGB1P48 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I045498 Promoter/Enhancer 1.6 Ensembl ENCODE 11.4 -30.8 -30841 3.3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 CCDC163 MMACHC PIR33787 PRDX1 MUTYH LRRC41 TOE1 NASP GPBP1L1 AKR1A1
GH01I045409 Enhancer 1.3 FANTOM5 Ensembl ENCODE 9.2 -119.5 -119531 3.8 HDAC1 ZBTB40 ZNF766 FOS ATF7 RUNX3 USF2 ZEB2 HDAC8 ZNF217 PRDX1 TESK2 HMGB1P48 MMACHC CCDC163 IPP PPIAP36 PIR46302
GH01I045319 Enhancer 0.8 FANTOM5 ENCODE 10.1 -209.6 -209628 3.5 FOXA2 JUNB BATF ZNF316 ATF4 GLIS1 ETV6 PRDM1 EMSY PRDX1 HMGB1P48 CCDC163 C1orf228 MMACHC HPDL ZSWIM5
GH01I045607 Enhancer 0.6 Ensembl ENCODE 10.4 +77.8 77779 2.6 POLR2A SCRT2 SUPT5H MAST2 GPBP1L1 TMEM69 HMGB1P48 PRDX1 ENSG00000281825 CCDC17 NASP
GH01I045541 Enhancer 1.5 FANTOM5 Ensembl ENCODE 0.4 +13.0 13029 4.9 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 IRF4 ZNF48 ETS1 CCDC163 PRDX1 IPP AKR1A1 MMACHC TESK2 GPBP1L1 TOE1 GC01P045551 HMGB1P48
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P48 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P48 Gene

Genomic Locations for HMGB1P48 Gene
1,802 bases
Plus strand

Genomic View for HMGB1P48 Gene

Genes around HMGB1P48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P48 Gene

Proteins for HMGB1P48 Gene

Post-translational modifications for HMGB1P48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P48 Gene

Domains & Families for HMGB1P48 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P48 Gene

Function for HMGB1P48 Gene

Phenotypes From GWAS Catalog for HMGB1P48 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P48 Gene

Localization for HMGB1P48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P48 Gene

Pathways & Interactions for HMGB1P48 Gene

SuperPathways for HMGB1P48 Gene

No Data Available

Interacting Proteins for HMGB1P48 Gene

Gene Ontology (GO) - Biological Process for HMGB1P48 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMGB1P48 Gene

Drugs & Compounds for HMGB1P48 Gene

No Compound Related Data Available

Transcripts for HMGB1P48 Gene

mRNA/cDNA for HMGB1P48 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P48 Gene

No ASD Table

Relevant External Links for HMGB1P48 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMGB1P48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P48 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P48 Gene:

genes like me logo Genes that share expression patterns with HMGB1P48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P48 Gene

Orthologs for HMGB1P48 Gene

Evolution for HMGB1P48 Gene

Gene Tree for HMGB1P48 (if available)
Gene Tree for HMGB1P48 (if available)

No data available for Orthologs for HMGB1P48 Gene

Paralogs for HMGB1P48 Gene

No data available for Paralogs for HMGB1P48 Gene

Variants for HMGB1P48 Gene

Additional Variant Information for HMGB1P48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P48 Gene

Disorders for HMGB1P48 Gene

No disorders were found for HMGB1P48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P48 Gene

Publications for HMGB1P48 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P48 Gene

Sources for HMGB1P48 Gene

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