Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMGB1P42 Gene

Subcategory (RNA class) for HMGB1P42 Gene

antisense

Aliases for HMGB1P42 Gene

  • High Mobility Group Box 1 Pseudogene 42 2 3 5
  • High-Mobility Group Box 1 Pseudogene 42 2

External Ids for HMGB1P42 Gene

ORGUL Members for HMGB1P42 Gene

Previous GeneCards Identifiers for HMGB1P42 Gene

  • GC00U931477
  • GC11M120806

Summaries for HMGB1P42 Gene

GeneCards Summary for HMGB1P42 Gene

HMGB1P42 (High Mobility Group Box 1 Pseudogene 42) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for HMGB1P42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P42 Gene

Genomics for HMGB1P42 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P42 Gene

Promoters and enhancers for HMGB1P42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I120934 Enhancer 0.5 ENCODE 0.8 +2.3 2337 0.1 CTCF GLIS1 BACH1 ZNF384 RAD21 TECTA HMGB1P42 GC11P120895 GRIK4
GH11I120952 Enhancer 0.9 Ensembl ENCODE 0.4 -16.6 -16563 1.5 ELF3 CTCF TFAP4 MXI1 KLF1 SIN3A EBF1 NFXL1 RAD21 GATA3 LOC101929208 HMGB1P42 GC11P120895 GRIK4
GH11I120926 Enhancer 0.7 ENCODE 0.4 +10.5 10507 0.2 BACH1 EBF1 BMI1 BATF IRF4 RELA NFATC1 ATF7 ETV6 BCLAF1 LOC101929227 TECTA HMGB1P42 GC11P120895 GRIK4
GH11I120929 Enhancer 0.6 ENCODE 0.4 +6.9 6887 0.2 CTCF ZNF654 USF1 ZNF449 MAX TRIM22 SIN3A RAD21 ZFP69B ZNF692 LOC101929227 GRIK4 TECTA HMGB1P42 GC11P120895
GH11I120956 Enhancer 0.7 Ensembl ENCODE 0.3 -20.8 -20766 1.5 SP1 GABPB1 POU5F1 ETS1 LOC101929208 TECTA HMGB1P42 GC11P120895 GRIK4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P42 Gene

Genomic Locations for HMGB1P42 Gene
chr11:120,936,028-120,936,654
(GRCh38/hg38)
Size:
627 bases
Orientation:
Minus strand
chr11:120,806,811-120,807,363
(GRCh37/hg19)

Genomic View for HMGB1P42 Gene

Genes around HMGB1P42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P42 Gene

Proteins for HMGB1P42 Gene

Post-translational modifications for HMGB1P42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P42 Gene

Domains & Families for HMGB1P42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P42 Gene

Function for HMGB1P42 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P42 Gene

Localization for HMGB1P42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P42 Gene

Pathways & Interactions for HMGB1P42 Gene

SuperPathways for HMGB1P42 Gene

No Data Available

Interacting Proteins for HMGB1P42 Gene

Gene Ontology (GO) - Biological Process for HMGB1P42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P42 Gene

Drugs & Compounds for HMGB1P42 Gene

No Compound Related Data Available

Transcripts for HMGB1P42 Gene

mRNA/cDNA for HMGB1P42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P42 Gene

No ASD Table

Relevant External Links for HMGB1P42 Gene

GeneLoc Exon Structure for
HMGB1P42
ECgene alternative splicing isoforms for
HMGB1P42

Expression for HMGB1P42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P42 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P42 Gene:

HMGB1P42
genes like me logo Genes that share expression patterns with HMGB1P42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P42 Gene

Orthologs for HMGB1P42 Gene

Evolution for HMGB1P42 Gene

ENSEMBL:
Gene Tree for HMGB1P42 (if available)
TreeFam:
Gene Tree for HMGB1P42 (if available)

No data available for Orthologs for HMGB1P42 Gene

Paralogs for HMGB1P42 Gene

No data available for Paralogs for HMGB1P42 Gene

Variants for HMGB1P42 Gene

Additional Variant Information for HMGB1P42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P42 Gene

Disorders for HMGB1P42 Gene

No disorders were found for HMGB1P42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P42 Gene

Publications for HMGB1P42 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P42 Gene

Sources for HMGB1P42 Gene

Content
Loading form....