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Aliases for HMGB1P4 Gene

Aliases for HMGB1P4 Gene

  • High Mobility Group Box 1 Pseudogene 4 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 4 Pseudogene 2 3
  • High-Mobility Group Box 1-Like 4 2 3
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 4 2
  • High-Mobility Group Box 1 Pseudogene 4 2
  • HMG1L4P 3
  • HMGB1L4 3
  • HMG1L4 3

External Ids for HMGB1P4 Gene

Previous HGNC Symbols for HMGB1P4 Gene

  • HMG1L4
  • HMG1L4P
  • HMGB1L4

Previous GeneCards Identifiers for HMGB1P4 Gene

  • GC02M171460

Summaries for HMGB1P4 Gene

GeneCards Summary for HMGB1P4 Gene

HMGB1P4 (High Mobility Group Box 1 Pseudogene 4) is a Pseudogene.

Additional gene information for HMGB1P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P4 Gene

Genomics for HMGB1P4 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P4 Gene

Promoters and enhancers for HMGB1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I170529 Enhancer 1.1 Ensembl ENCODE 0.2 +72.0 72039 0.7 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF48 YY1 SLC30A9 RXRA SP5 GC02P170510 HMGB1P4 MYO3B
GH02I170525 Enhancer 0.9 Ensembl ENCODE 0.2 +76.7 76705 1.3 MEIS2 ESRRA PKNOX1 JUN EBF1 HIC1 FOSL1 ZNF366 SCRT2 FOSL2 GC02P170510 HMGB1P4 MYO3B
GH02I170567 Enhancer 0.5 ENCODE 0.3 +34.4 34446 1.3 ZNF316 RXRA HNF4G HNF4A MAFK RAD21 UBR3 ENSG00000239467 HMGB1P4 GC02P170510 MYO3B
GH02I170509 Enhancer 0.7 ENCODE 0.2 +92.4 92398 0.2 PKNOX1 ZBTB40 BATF IRF4 RELA ATF7 RUNX3 SRF NR2F1 CBFB GC02P170510 HMGB1P4 MYO3B
GH02I170554 Enhancer 0.5 ENCODE 0.2 +47.6 47599 1.1 JUND RXRA JUN NBN HNF4A RAD21 GC02P170510 HMGB1P4 MYO3B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P4 Gene

Genomic Locations for HMGB1P4 Gene
chr2:170,600,138-170,602,384
(GRCh38/hg38)
Size:
2,247 bases
Orientation:
Minus strand
chr2:171,456,651-171,458,894
(GRCh37/hg19)

Genomic View for HMGB1P4 Gene

Genes around HMGB1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P4 Gene

Proteins for HMGB1P4 Gene

Post-translational modifications for HMGB1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P4 Gene

Domains & Families for HMGB1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P4 Gene

Function for HMGB1P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P4 Gene

Localization for HMGB1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P4 Gene

Pathways & Interactions for HMGB1P4 Gene

SuperPathways for HMGB1P4 Gene

No Data Available

Interacting Proteins for HMGB1P4 Gene

Gene Ontology (GO) - Biological Process for HMGB1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P4 Gene

Drugs & Compounds for HMGB1P4 Gene

No Compound Related Data Available

Transcripts for HMGB1P4 Gene

mRNA/cDNA for HMGB1P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P4 Gene

No ASD Table

Relevant External Links for HMGB1P4 Gene

GeneLoc Exon Structure for
HMGB1P4
ECgene alternative splicing isoforms for
HMGB1P4

Expression for HMGB1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P4 Gene:

HMGB1P4
genes like me logo Genes that share expression patterns with HMGB1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P4 Gene

Orthologs for HMGB1P4 Gene

Evolution for HMGB1P4 Gene

ENSEMBL:
Gene Tree for HMGB1P4 (if available)
TreeFam:
Gene Tree for HMGB1P4 (if available)

No data available for Orthologs for HMGB1P4 Gene

Paralogs for HMGB1P4 Gene

No data available for Paralogs for HMGB1P4 Gene

Variants for HMGB1P4 Gene

Additional Variant Information for HMGB1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P4 Gene

Disorders for HMGB1P4 Gene

No disorders were found for HMGB1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P4 Gene

Publications for HMGB1P4 Gene

  1. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P … Bullerdiek J (Cytogenetics and cell genetics 1998) 2 3 58
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for HMGB1P4 Gene

Sources for HMGB1P4 Gene

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