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Aliases for HMGB1P33 Gene

Subcategory (RNA class) for HMGB1P33 Gene

lncRNA

Aliases for HMGB1P33 Gene

  • High Mobility Group Box 1 Pseudogene 33 2 3 5
  • High-Mobility Group Box 1 Pseudogene 33 2

External Ids for HMGB1P33 Gene

ORGUL Members for HMGB1P33 Gene

Previous GeneCards Identifiers for HMGB1P33 Gene

  • GC00U931559
  • GC15U901496

Summaries for HMGB1P33 Gene

GeneCards Summary for HMGB1P33 Gene

HMGB1P33 (High Mobility Group Box 1 Pseudogene 33) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB1P33 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P33 Gene

Genomics for HMGB1P33 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P33 Gene

Promoters and enhancers for HMGB1P33 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I056323 Enhancer 0.5 FANTOM5 550.8 +0.2 167 0.3 ZNF316 ZNF512 IKZF1 EMSY HMGB1P33 RFX7 ENSG00000259941 TEX9
GH15I056364 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +42.5 42532 1.8 ATF1 MLX ARID4B SIN3A DMAP1 BRCA1 ZNF48 YY1 POLR2B ATF7 TEX9 RFX7 ENSG00000259941 HMGB1P33
GH15I056320 Enhancer 0.8 ENCODE 0.8 -2.5 -2515 0.2 HDAC1 ATF1 ARNT CHAMP1 NCOA2 TCF12 GATA2 ATF7 NCOA1 ZEB2 TEX9 RFX7 HMGB1P33 GC15M056738 RNU6-1287P
GH15I056327 Enhancer 0.4 ENCODE 0.8 +4.8 4795 0.2 POLR2A CEBPB REST TEX9 HMGB1P33 ENSG00000259941
GH15I056370 Enhancer 0.9 ENCODE dbSUPER 0.2 +48.7 48731 3.3 ZNF449 EBF1 BATF ZIC2 IRF4 RELA ZNF121 ZNF664 NFATC1 ATF7 ENSG00000259941 HMGB1P33 TEX9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P33 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P33 Gene

Genomic Locations for HMGB1P33 Gene
chr15:56,323,113-56,323,719
(GRCh38/hg38)
Size:
607 bases
Orientation:
Plus strand

Genomic View for HMGB1P33 Gene

Genes around HMGB1P33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P33 Gene

Proteins for HMGB1P33 Gene

Post-translational modifications for HMGB1P33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P33 Gene

Domains & Families for HMGB1P33 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P33 Gene

Function for HMGB1P33 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P33 Gene

Localization for HMGB1P33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P33 Gene

Pathways & Interactions for HMGB1P33 Gene

SuperPathways for HMGB1P33 Gene

No Data Available

Interacting Proteins for HMGB1P33 Gene

Gene Ontology (GO) - Biological Process for HMGB1P33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P33 Gene

Drugs & Compounds for HMGB1P33 Gene

No Compound Related Data Available

Transcripts for HMGB1P33 Gene

mRNA/cDNA for HMGB1P33 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P33 Gene

No ASD Table

Relevant External Links for HMGB1P33 Gene

GeneLoc Exon Structure for
HMGB1P33
ECgene alternative splicing isoforms for
HMGB1P33

Expression for HMGB1P33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P33 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P33 Gene:

HMGB1P33
genes like me logo Genes that share expression patterns with HMGB1P33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P33 Gene

Orthologs for HMGB1P33 Gene

Evolution for HMGB1P33 Gene

ENSEMBL:
Gene Tree for HMGB1P33 (if available)
TreeFam:
Gene Tree for HMGB1P33 (if available)

No data available for Orthologs for HMGB1P33 Gene

Paralogs for HMGB1P33 Gene

No data available for Paralogs for HMGB1P33 Gene

Variants for HMGB1P33 Gene

Additional Variant Information for HMGB1P33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P33 Gene

Disorders for HMGB1P33 Gene

No disorders were found for HMGB1P33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P33 Gene

Publications for HMGB1P33 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P33 Gene

Sources for HMGB1P33 Gene

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