Aliases for HMGB1P30 Gene

Aliases for HMGB1P30 Gene

  • High Mobility Group Box 1 Pseudogene 30 2 3 5
  • High-Mobility Group Box 1 Pseudogene 30 2

External Ids for HMGB1P30 Gene

Previous GeneCards Identifiers for HMGB1P30 Gene

  • GC00U931355
  • GC03M148543

Summaries for HMGB1P30 Gene

GeneCards Summary for HMGB1P30 Gene

HMGB1P30 (High Mobility Group Box 1 Pseudogene 30) is a Pseudogene.

Additional gene information for HMGB1P30 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB1P30 Gene

Genomics for HMGB1P30 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P30 Gene

Promoters and enhancers for HMGB1P30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J148826 Promoter/Enhancer 0.7 EPDnew Ensembl ENCODE 0.7 -2.6 -2643 2.3 CPB1 HMGB1P30 lnc-HLTF-7 CPA3
GH03J148819 Enhancer 0.4 Ensembl 0.7 +4.7 4686 2.2 RXRA FOXA1 RARA POU5F1 HMGB1P30 lnc-HLTF-7 lnc-HLTF-8 CPB1
GH03J148840 Enhancer 0.3 Ensembl 0.4 -15.5 -15514 0.2 FOXP2 GATA1 lnc-HLTF-7 HMGB1P30 CPA3 CPB1
GH03J148863 Enhancer 0.4 FANTOM5 0.3 -38.6 -38634 0.1 KLF9 KLF1 GATA1 CPA3 lnc-HLTF-7 HMGB1P30 ENSG00000240521
GH03J148839 Enhancer 0.2 Ensembl 0.4 -14.0 -14014 0.8 lnc-HLTF-7 HMGB1P30 CPA3 CPB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB1P30 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P30 Gene

Genomic Locations for HMGB1P30 Gene
chr3:148,824,782-148,825,387
(GRCh38/hg38)
Size:
606 bases
Orientation:
Minus strand
chr3:148,542,569-148,543,174
(GRCh37/hg19)
Size:
606 bases
Orientation:
Minus strand

Genomic View for HMGB1P30 Gene

Genes around HMGB1P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P30 Gene

Proteins for HMGB1P30 Gene

Post-translational modifications for HMGB1P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P30 Gene

Domains & Families for HMGB1P30 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB1P30 Gene

Function for HMGB1P30 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P30 Gene

Localization for HMGB1P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P30 Gene

Pathways & Interactions for HMGB1P30 Gene

PathCards logo

SuperPathways for HMGB1P30 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HMGB1P30 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB1P30 Gene

Drugs & Compounds for HMGB1P30 Gene

No Compound Related Data Available

Transcripts for HMGB1P30 Gene

mRNA/cDNA for HMGB1P30 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P30 Gene

No ASD Table

Relevant External Links for HMGB1P30 Gene

GeneLoc Exon Structure for
HMGB1P30

Expression for HMGB1P30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P30 Gene

genes like me logo Genes that share expression patterns with HMGB1P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P30 Gene

Orthologs for HMGB1P30 Gene

Evolution for HMGB1P30 Gene

ENSEMBL:
Gene Tree for HMGB1P30 (if available)
TreeFam:
Gene Tree for HMGB1P30 (if available)

No data available for Orthologs for HMGB1P30 Gene

Paralogs for HMGB1P30 Gene

No data available for Paralogs for HMGB1P30 Gene

Variants for HMGB1P30 Gene

Additional Variant Information for HMGB1P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P30 Gene

Disorders for HMGB1P30 Gene

No disorders were found for HMGB1P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P30 Gene

Publications for HMGB1P30 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 54

No data available for Mastermind for HMGB1P30 Gene

Products for HMGB1P30 Gene

Sources for HMGB1P30 Gene