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Aliases for HMGB1P3 Gene

Aliases for HMGB1P3 Gene

  • High Mobility Group Box 1 Pseudogene 3 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 3 2 3
  • High-Mobility Group Box 1-Like 3 2 3
  • High-Mobility Group Box 1 Pseudogene 3 2
  • HMGB1L3 3
  • HMG1L3 3

External Ids for HMGB1P3 Gene

Previous HGNC Symbols for HMGB1P3 Gene

  • HMG1L3
  • HMGB1L3

Previous GeneCards Identifiers for HMGB1P3 Gene

  • GC02P231383

Summaries for HMGB1P3 Gene

GeneCards Summary for HMGB1P3 Gene

HMGB1P3 (High Mobility Group Box 1 Pseudogene 3) is a Pseudogene.

Additional gene information for HMGB1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P3 Gene

Genomics for HMGB1P3 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P3 Gene

Promoters and enhancers for HMGB1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I230513 Enhancer 1.1 FANTOM5 ENCODE 550.8 -1.4 -1396 0.4 HDAC1 FOXA2 ARID4B RAD21 RARA YY1 FOS THAP11 MIXL1 HMG20B HMGB1P3 RNU6-451P RN7SL834P LOC101928816 SP100
GH02I230520 Enhancer 0.5 ENCODE 0.4 +6.1 6140 0.2 RXRA ATF3 CEBPB FOSL2 CEBPG HNF4A RNU6-451P HMGB1P3 GC02P230547 LOC101928816 SP100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P3 Gene

Genomic Locations for HMGB1P3 Gene
chr2:230,514,861-230,516,201
(GRCh38/hg38)
Size:
1,341 bases
Orientation:
Plus strand
chr2:231,379,576-231,380,916
(GRCh37/hg19)

Genomic View for HMGB1P3 Gene

Genes around HMGB1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P3 Gene

Proteins for HMGB1P3 Gene

Post-translational modifications for HMGB1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P3 Gene

Domains & Families for HMGB1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P3 Gene

Function for HMGB1P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P3 Gene

Localization for HMGB1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P3 Gene

Pathways & Interactions for HMGB1P3 Gene

SuperPathways for HMGB1P3 Gene

No Data Available

Interacting Proteins for HMGB1P3 Gene

Gene Ontology (GO) - Biological Process for HMGB1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P3 Gene

Drugs & Compounds for HMGB1P3 Gene

No Compound Related Data Available

Transcripts for HMGB1P3 Gene

mRNA/cDNA for HMGB1P3 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P3 Gene

No ASD Table

Relevant External Links for HMGB1P3 Gene

GeneLoc Exon Structure for
HMGB1P3
ECgene alternative splicing isoforms for
HMGB1P3

Expression for HMGB1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P3 Gene

mRNA differential expression in normal tissues according to GTEx for HMGB1P3 Gene

This gene is overexpressed in Whole Blood (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P3 Gene:

HMGB1P3
genes like me logo Genes that share expression patterns with HMGB1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P3 Gene

Orthologs for HMGB1P3 Gene

Evolution for HMGB1P3 Gene

ENSEMBL:
Gene Tree for HMGB1P3 (if available)
TreeFam:
Gene Tree for HMGB1P3 (if available)

No data available for Orthologs for HMGB1P3 Gene

Paralogs for HMGB1P3 Gene

No data available for Paralogs for HMGB1P3 Gene

Variants for HMGB1P3 Gene

Additional Variant Information for HMGB1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P3 Gene

Disorders for HMGB1P3 Gene

No disorders were found for HMGB1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P3 Gene

Publications for HMGB1P3 Gene

  1. Mapping and molecular characterization of five HMG1-related DNA sequences. (PMID: 9925949) Rogalla P … Bullerdiek J (Cytogenetics and cell genetics 1998) 2 3 58
  2. Back to the roots of a new exon--the molecular archaeology of a SP100 splice variant. (PMID: 10766566) Rogalla P … Bullerdiek J (Genomics 2000) 3 58

Products for HMGB1P3 Gene

Sources for HMGB1P3 Gene

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