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Aliases for HMGB1P25 Gene

Subcategory (RNA class) for HMGB1P25 Gene

lncRNA

Aliases for HMGB1P25 Gene

  • High Mobility Group Box 1 Pseudogene 25 2 3 5
  • High-Mobility Group Box 1 Pseudogene 25 2

External Ids for HMGB1P25 Gene

ORGUL Members for HMGB1P25 Gene

Previous GeneCards Identifiers for HMGB1P25 Gene

  • GC02M009159

Summaries for HMGB1P25 Gene

GeneCards Summary for HMGB1P25 Gene

HMGB1P25 (High Mobility Group Box 1 Pseudogene 25) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HMGB1P25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P25 Gene

Genomics for HMGB1P25 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P25 Gene

Promoters and enhancers for HMGB1P25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I009002 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +15.0 14967 2.9 PKNOX1 SMAD1 SIN3A FEZF1 POLR2B ZNF207 ZNF143 FOS SP3 NFYC MBOAT2 ENSG00000239300 CPSF3 TAF1B HMGB1P25
GH02I009058 Enhancer 0.8 ENCODE 0.3 -39.3 -39278 0.2 KLF1 NFATC3 JUN KLF17 CHAMP1 HIC1 FOSL1 ZFHX2 CTBP1 ZNF316 MBOAT2 RPL30P3 HMGB1P25
GH02I009070 Enhancer 0.8 ENCODE 0.2 -52.7 -52685 2.4 CLOCK JUN MAX RAD21 FOSL1 POLR2A NFYB CBFA2T2 TRIM24 FOSL2 MBOAT2 ENSG00000261104 RPL30P3 HMGB1P25
GH02I009074 Enhancer 0.6 ENCODE 0.2 -56.2 -56158 0.2 USF1 MAX ATF2 ZNF395 SP1 SCRT2 POU5F1 ATF7 SP7 MBOAT2 RPL30P3 HMGB1P25
GH02I009060 Enhancer 0.4 ENCODE 0.3 -42.1 -42088 0.2 RCOR1 CHD2 MBOAT2 ENSG00000261104 RPL30P3 HMGB1P25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P25 Gene

Genomic Locations for HMGB1P25 Gene
chr2:9,018,263-9,018,899
(GRCh38/hg38)
Size:
637 bases
Orientation:
Minus strand
chr2:9,158,392-9,159,028
(GRCh37/hg19)

Genomic View for HMGB1P25 Gene

Genes around HMGB1P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P25 Gene

Proteins for HMGB1P25 Gene

Post-translational modifications for HMGB1P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P25 Gene

Domains & Families for HMGB1P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P25 Gene

Function for HMGB1P25 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P25 Gene

Localization for HMGB1P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P25 Gene

Pathways & Interactions for HMGB1P25 Gene

SuperPathways for HMGB1P25 Gene

No Data Available

Interacting Proteins for HMGB1P25 Gene

Gene Ontology (GO) - Biological Process for HMGB1P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P25 Gene

Drugs & Compounds for HMGB1P25 Gene

No Compound Related Data Available

Transcripts for HMGB1P25 Gene

mRNA/cDNA for HMGB1P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P25 Gene

No ASD Table

Relevant External Links for HMGB1P25 Gene

GeneLoc Exon Structure for
HMGB1P25
ECgene alternative splicing isoforms for
HMGB1P25

Expression for HMGB1P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P25 Gene:

HMGB1P25
genes like me logo Genes that share expression patterns with HMGB1P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P25 Gene

Orthologs for HMGB1P25 Gene

Evolution for HMGB1P25 Gene

ENSEMBL:
Gene Tree for HMGB1P25 (if available)
TreeFam:
Gene Tree for HMGB1P25 (if available)

No data available for Orthologs for HMGB1P25 Gene

Paralogs for HMGB1P25 Gene

No data available for Paralogs for HMGB1P25 Gene

Variants for HMGB1P25 Gene

Additional Variant Information for HMGB1P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P25 Gene

Disorders for HMGB1P25 Gene

No disorders were found for HMGB1P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P25 Gene

Publications for HMGB1P25 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58

Products for HMGB1P25 Gene

Sources for HMGB1P25 Gene

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