Aliases for HMGB1P18 Gene

Aliases for HMGB1P18 Gene

  • High Mobility Group Box 1 Pseudogene 18 2 3 5
  • High-Mobility Group Box 1 Pseudogene 18 2

External Ids for HMGB1P18 Gene

Previous GeneCards Identifiers for HMGB1P18 Gene

  • GC01P080751

Summaries for HMGB1P18 Gene

GeneCards Summary for HMGB1P18 Gene

HMGB1P18 (High Mobility Group Box 1 Pseudogene 18) is a Pseudogene.

Additional gene information for HMGB1P18 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGB1P18 Gene

Genomics for HMGB1P18 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P18 Gene

Promoters and enhancers for HMGB1P18 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J080217 Enhancer 0.6 Ensembl 0.2 -65.5 -65451 0.6 CTCF SMC3 RAD21 GATA3 IKZF3 ZNF654 RCOR1 HNF4A RFX5 YY1 HMGB1P18 lnc-ADGRL2-11 lnc-ADGRL4-12
GH01J080160 Enhancer 0.5 ENCODE 0.1 -123.0 -123001 0.2 ZNF217 DPF2 GATA3 TCF7L2 SMARCE1 TARDBP lnc-ADGRL4-12 HMGB1P18 lnc-ADGRL2-11
GH01J080155 Enhancer 0.4 Ensembl 0.1 -127.6 -127552 0.4 USF1 CTCF RAD21 ZNF24 ZBTB44 lnc-ADGRL4-12 lnc-ADGRL2-11 HMGB1P18
GH01J080157 Enhancer 0.3 Ensembl 0.1 -125.1 -125051 0.6 EP300 POLR2A lnc-ADGRL4-12 lnc-ADGRL2-11 HMGB1P18
GH01J080163 Enhancer 0.2 Ensembl 0.1 -119.9 -119851 0.6 lnc-ADGRL4-12 HMGB1P18 lnc-ADGRL2-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGB1P18 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P18 Gene

Genomic Locations for HMGB1P18 Gene
chr1:80,283,352-80,283,970
(GRCh38/hg38)
Size:
619 bases
Orientation:
Plus strand
chr1:80,749,037-80,749,655
(GRCh37/hg19)
Size:
619 bases
Orientation:
Plus strand

Genomic View for HMGB1P18 Gene

Genes around HMGB1P18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P18 Gene

Proteins for HMGB1P18 Gene

Post-translational modifications for HMGB1P18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P18 Gene

Domains & Families for HMGB1P18 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGB1P18 Gene

Function for HMGB1P18 Gene

Phenotypes From GWAS Catalog for HMGB1P18 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P18 Gene

Localization for HMGB1P18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P18 Gene

Pathways & Interactions for HMGB1P18 Gene

PathCards logo

SuperPathways for HMGB1P18 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for HMGB1P18 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGB1P18 Gene

Drugs & Compounds for HMGB1P18 Gene

No Compound Related Data Available

Transcripts for HMGB1P18 Gene

mRNA/cDNA for HMGB1P18 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P18 Gene

No ASD Table

Relevant External Links for HMGB1P18 Gene

GeneLoc Exon Structure for
HMGB1P18

Expression for HMGB1P18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGB1P18 Gene

genes like me logo Genes that share expression patterns with HMGB1P18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P18 Gene

Orthologs for HMGB1P18 Gene

Evolution for HMGB1P18 Gene

ENSEMBL:
Gene Tree for HMGB1P18 (if available)
TreeFam:
Gene Tree for HMGB1P18 (if available)

No data available for Orthologs for HMGB1P18 Gene

Paralogs for HMGB1P18 Gene

No data available for Paralogs for HMGB1P18 Gene

Variants for HMGB1P18 Gene

Additional Variant Information for HMGB1P18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P18 Gene

Disorders for HMGB1P18 Gene

No disorders were found for HMGB1P18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGB1P18 Gene

Publications for HMGB1P18 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 54
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54

No data available for Mastermind for HMGB1P18 Gene

Products for HMGB1P18 Gene

Sources for HMGB1P18 Gene