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Aliases for HMGB1P10 Gene

Aliases for HMGB1P10 Gene

  • High Mobility Group Box 1 Pseudogene 10 2 3 5
  • High-Mobility Group (Nonhistone Chromosomal) Protein 1-Like 10 2 3
  • High-Mobility Group Box 1-Like 10 2 3
  • High-Mobility Group Box 1 Pseudogene 10 2
  • BK445C9.3 3
  • HMGB1L10 3
  • HMG1L10 3

External Ids for HMGB1P10 Gene

Previous HGNC Symbols for HMGB1P10 Gene

  • HMG1L10
  • HMGB1L10

Previous GeneCards Identifiers for HMGB1P10 Gene

  • GC22P026957

Summaries for HMGB1P10 Gene

GeneCards Summary for HMGB1P10 Gene

HMGB1P10 (High Mobility Group Box 1 Pseudogene 10) is a Pseudogene.

Additional gene information for HMGB1P10 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGB1P10 Gene

Genomics for HMGB1P10 Gene

GeneHancer (GH) Regulatory Elements for HMGB1P10 Gene

Promoters and enhancers for HMGB1P10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I026558 Enhancer 0.7 Ensembl dbSUPER 574.7 -1.8 -1827 0.4 ATF3 RXRA HNF4A ZIC2 HMGB1P10 TFIP11 MIR548J TPST2
GH22I026560 Enhancer 0.6 Ensembl ENCODE dbSUPER 580.7 -0.1 -123 0.6 HMGB1P10 TFIP11 MIR548J TPST2
GH22I026584 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.8 +27.4 27431 6.2 ATF1 ARNT ARID4B SIN3A YY1 ZNF121 GLIS2 ZNF143 KLF7 FOS TPST2 CRYBA4 CRYBB1 HMGB1P10 MIR548J TFIP11
GH22I026631 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 19.9 +72.2 72211 3 ATF1 SMAD1 ARNT NCOA2 TCF12 POLR2B ZNF766 GATA2 ATF7 CAVIN1 TPST2 HMGB1P10 CRYBA4 MIR548J TFIP11 HPS4 SRRD MIATNB CRYBB1 ISCA2P1
GH22I026640 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 12 +83.0 82976 5.2 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A YBX1 ZNF2 YY1 POLR2B ISCA2P1 TFIP11 MIATNB RPL15P22 TPST2 LOC100507599 CRYBB1 CRYBA4 HMGB1P10 MIR548J
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMGB1P10 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGB1P10 Gene

Genomic Locations for HMGB1P10 Gene
chr22:26,560,428-26,561,616
(GRCh38/hg38)
Size:
1,189 bases
Orientation:
Plus strand
chr22:26,956,394-26,957,582
(GRCh37/hg19)

Genomic View for HMGB1P10 Gene

Genes around HMGB1P10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGB1P10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGB1P10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGB1P10 Gene

Proteins for HMGB1P10 Gene

Post-translational modifications for HMGB1P10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGB1P10 Gene

Domains & Families for HMGB1P10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGB1P10 Gene

Function for HMGB1P10 Gene

Phenotypes From GWAS Catalog for HMGB1P10 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGB1P10 Gene

Localization for HMGB1P10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGB1P10 Gene

Pathways & Interactions for HMGB1P10 Gene

SuperPathways for HMGB1P10 Gene

No Data Available

Interacting Proteins for HMGB1P10 Gene

Gene Ontology (GO) - Biological Process for HMGB1P10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGB1P10 Gene

Drugs & Compounds for HMGB1P10 Gene

No Compound Related Data Available

Transcripts for HMGB1P10 Gene

mRNA/cDNA for HMGB1P10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGB1P10 Gene

No ASD Table

Relevant External Links for HMGB1P10 Gene

GeneLoc Exon Structure for
HMGB1P10
ECgene alternative splicing isoforms for
HMGB1P10

Expression for HMGB1P10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGB1P10 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGB1P10 Gene:

HMGB1P10
genes like me logo Genes that share expression patterns with HMGB1P10: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGB1P10 Gene

Orthologs for HMGB1P10 Gene

Evolution for HMGB1P10 Gene

ENSEMBL:
Gene Tree for HMGB1P10 (if available)
TreeFam:
Gene Tree for HMGB1P10 (if available)

No data available for Orthologs for HMGB1P10 Gene

Paralogs for HMGB1P10 Gene

No data available for Paralogs for HMGB1P10 Gene

Variants for HMGB1P10 Gene

Additional Variant Information for HMGB1P10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGB1P10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGB1P10 Gene

Disorders for HMGB1P10 Gene

Additional Disease Information for HMGB1P10

No disorders were found for HMGB1P10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGB1P10 Gene

Publications for HMGB1P10 Gene

  1. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 2 3 58
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3 58
  4. Complementary quantitative proteomics reveals that transcription factor AP-4 mediates E-box-dependent complex formation for transcriptional repression of HDM2. (PMID: 19505873) Ku WC … Chen YJ (Molecular & cellular proteomics : MCP 2009) 3 58
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L … Andersson-Svahn H (Molecular & cellular proteomics : MCP 2008) 3 58

Products for HMGB1P10 Gene

Sources for HMGB1P10 Gene

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