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Aliases for HMGA2-AS1 Gene

Subcategory (RNA class) for HMGA2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HMGA2-AS1 Gene

  • HMGA2 Antisense RNA 1 2 3 5
  • RP11-366L20.2 3

External Ids for HMGA2-AS1 Gene

Summaries for HMGA2-AS1 Gene

GeneCards Summary for HMGA2-AS1 Gene

HMGA2-AS1 (HMGA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HMGA2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA2-AS1 Gene

Genomics for HMGA2-AS1 Gene

GeneHancer (GH) Regulatory Elements for HMGA2-AS1 Gene

Promoters and enhancers for HMGA2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGA2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGA2-AS1 Gene

Genomic Locations for HMGA2-AS1 Gene
chr12:65,851,227-65,883,544
(GRCh38/hg38)
Size:
32,318 bases
Orientation:
Minus strand
chr12:66,249,669-66,275,821
(GRCh37/hg19)
Size:
26,153 bases
Orientation:
Minus strand

Genomic View for HMGA2-AS1 Gene

Genes around HMGA2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA2-AS1 Gene

Proteins for HMGA2-AS1 Gene

Post-translational modifications for HMGA2-AS1 Gene

No Post-translational modifications

Other Protein References for HMGA2-AS1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for HMGA2-AS1 Gene

Domains & Families for HMGA2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA2-AS1 Gene

Function for HMGA2-AS1 Gene

Phenotypes From GWAS Catalog for HMGA2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA2-AS1 Gene

Localization for HMGA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA2-AS1 Gene

Pathways & Interactions for HMGA2-AS1 Gene

PathCards logo

SuperPathways for HMGA2-AS1 Gene

No Data Available

Interacting Proteins for HMGA2-AS1 Gene

Gene Ontology (GO) - Biological Process for HMGA2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA2-AS1 Gene

Drugs & Compounds for HMGA2-AS1 Gene

No Compound Related Data Available

Transcripts for HMGA2-AS1 Gene

mRNA/cDNA for HMGA2-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNA Central transcripts :

Unigene Clusters for HMGA2-AS1 Gene

Uncharacterized LOC100129940:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA2-AS1 Gene

No ASD Table

Relevant External Links for HMGA2-AS1 Gene

GeneLoc Exon Structure for
HMGA2-AS1
ECgene alternative splicing isoforms for
HMGA2-AS1

Expression for HMGA2-AS1 Gene

SOURCE GeneReport for Unigene cluster for HMGA2-AS1 Gene:

Hs.685856

Evidence on tissue expression from TISSUES for HMGA2-AS1 Gene

  • Eye(4.4)
  • Nervous system(3.1)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA2-AS1 Gene

Orthologs for HMGA2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HMGA2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 98 (a)
OneToOne
Species where no ortholog for HMGA2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HMGA2-AS1 Gene

ENSEMBL:
Gene Tree for HMGA2-AS1 (if available)
TreeFam:
Gene Tree for HMGA2-AS1 (if available)

Paralogs for HMGA2-AS1 Gene

No data available for Paralogs for HMGA2-AS1 Gene

Variants for HMGA2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HMGA2-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000036093 -- 65,861,071(-) A/G/T genic_downstream_transcript_variant, intron_variant
rs1000185497 -- 65,879,480(-) A/C/T intron_variant
rs1000328170 -- 65,853,146(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000360690 -- 65,873,417(-) G/A/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000399821 -- 65,860,544(-) C/T genic_downstream_transcript_variant, intron_variant

Variation tolerance for HMGA2-AS1 Gene

Gene Damage Index Score: 1.17; 23.54% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for HMGA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HMGA2-AS1 Gene

Disorders for HMGA2-AS1 Gene

No disorders were found for HMGA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA2-AS1 Gene

Publications for HMGA2-AS1 Gene

  1. Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes. (PMID: 25102180) Ng MC … MEta-analysis of type 2 DIabetes in African Americans Consortium (PLoS genetics 2014) 3 58
  2. Identification and characterization of novel human transcripts embedded within HMGA2 in t(12;14)(q15;q24.1) uterine leiomyoma. (PMID: 17045619) Ingraham SE … Lepont P (Mutation research 2006) 3 58

Products for HMGA2-AS1 Gene

Sources for HMGA2-AS1 Gene

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