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Aliases for HMGA1P3 Gene

Aliases for HMGA1P3 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 3 2 3 5
  • High Mobility Group AT-Hook 1-Like 3 2 3
  • HMGA1L3 Retropseudogene 3
  • HMGIYL3 3
  • HMGA1L3 3

External Ids for HMGA1P3 Gene

Previous HGNC Symbols for HMGA1P3 Gene

  • HMGA1L3

Previous GeneCards Identifiers for HMGA1P3 Gene

  • GC12M110867

Summaries for HMGA1P3 Gene

GeneCards Summary for HMGA1P3 Gene

HMGA1P3 (High Mobility Group AT-Hook 1 Pseudogene 3) is a Pseudogene.

Additional gene information for HMGA1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMGA1P3 Gene

Genomics for HMGA1P3 Gene

GeneHancer (GH) Regulatory Elements for HMGA1P3 Gene

Promoters and enhancers for HMGA1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J110430 Promoter/Enhancer 1.5 Ensembl ENCODE 600.7 -1.3 -1268 1.4 CC2D1A CTCF GTF2F1 ZNF384 ZBTB7A SP7 MLLT1 RAD21 KAT8 IKZF1 HMGA1P3 FAM216A PIR42495 ENSG00000258210
GH12J110429 Enhancer 0.3 FANTOM5 600.7 +0.9 880 0.4 HMGA1P3 ENSG00000258210 GC12M110397
GH12J110416 Enhancer 0.9 Ensembl 0.4 +12.6 12592 2.4 CC2D1A CBFA2T2 MLLT1 ZNF384 TRIM24 PRDM1 SMARCA4 MTA1 GMEB1 DPF2 ARPC3 ATP2A2 GC12M110397 HMGA1P3 ENSG00000258210
GH12J110424 Enhancer 0.4 Ensembl ENCODE 0.4 +5.9 5892 0.6 HMGA1P3 GC12M110397 ENSG00000258210
GH12J110422 Enhancer 0.4 Ensembl 0.4 +7.3 7292 0.6 PKNOX1 HLF HMGA1P3 GC12M110397 ENSG00000258210
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGA1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMGA1P3 Gene

Genomic Locations for HMGA1P3 Gene
chr12:110,428,598-110,430,393
(GRCh38/hg38)
Size:
1,796 bases
Orientation:
Minus strand
chr12:110,866,403-110,868,198
(GRCh37/hg19)
Size:
1,796 bases
Orientation:
Minus strand

Genomic View for HMGA1P3 Gene

Genes around HMGA1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P3 Gene

Proteins for HMGA1P3 Gene

Post-translational modifications for HMGA1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P3 Gene

Domains & Families for HMGA1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMGA1P3 Gene

Function for HMGA1P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P3 Gene

Localization for HMGA1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA1P3 Gene

Pathways & Interactions for HMGA1P3 Gene

PathCards logo

SuperPathways for HMGA1P3 Gene

No Data Available

Interacting Proteins for HMGA1P3 Gene

Gene Ontology (GO) - Biological Process for HMGA1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HMGA1P3 Gene

Drugs & Compounds for HMGA1P3 Gene

No Compound Related Data Available

Transcripts for HMGA1P3 Gene

mRNA/cDNA for HMGA1P3 Gene

(16) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P3 Gene

No ASD Table

Relevant External Links for HMGA1P3 Gene

GeneLoc Exon Structure for
HMGA1P3
ECgene alternative splicing isoforms for
HMGA1P3

Expression for HMGA1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMGA1P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of HMGA1P3 Gene:

HMGA1P3
genes like me logo Genes that share expression patterns with HMGA1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P3 Gene

Orthologs for HMGA1P3 Gene

Evolution for HMGA1P3 Gene

ENSEMBL:
Gene Tree for HMGA1P3 (if available)
TreeFam:
Gene Tree for HMGA1P3 (if available)

No data available for Orthologs for HMGA1P3 Gene

Paralogs for HMGA1P3 Gene

No data available for Paralogs for HMGA1P3 Gene

Variants for HMGA1P3 Gene

Additional Variant Information for HMGA1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P3 Gene

Disorders for HMGA1P3 Gene

No disorders were found for HMGA1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMGA1P3 Gene

Publications for HMGA1P3 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3 58
  2. Significant correlation between the breakpoints of rare clonal aberrations in benign solid tumors and the assignment of HMGIY retropseudogenes. (PMID: 11672774) Rogalla P … Bullerdiek J (Cancer genetics and cytogenetics 2001) 2 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58

Products for HMGA1P3 Gene

Sources for HMGA1P3 Gene

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