Aliases for HMGA1P2 Gene

Aliases for HMGA1P2 Gene

  • High Mobility Group AT-Hook 1 Pseudogene 2 2 3 5
  • High Mobility Group AT-Hook 1-Like 2 2 3
  • HMGIYL2 2 3
  • High Mobility Group Protein Isoforms I And Y-Like Protein 2 Pseudogene 3
  • HMGA1L2 3
  • HMGA1P2 5

External Ids for HMGA1P2 Gene

Previous HGNC Symbols for HMGA1P2 Gene

  • HMGA1L2

Previous GeneCards Identifiers for HMGA1P2 Gene

  • GC04P073965

Summaries for HMGA1P2 Gene

GeneCards Summary for HMGA1P2 Gene

HMGA1P2 (High Mobility Group AT-Hook 1 Pseudogene 2) is a Pseudogene.

Additional gene information for HMGA1P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMGA1P2 Gene

Genomics for HMGA1P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMGA1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J073098 Enhancer 0.5 Ensembl 600.7 +0.5 460 0.8 POLR2A RBM22 ZFHX2 SUPT5H EGR2 HMGA1P2 lnc-ALB-8 ENSG00000250220 ANKRD17 ENSG00000221639 lnc-COX18-4 COX18
GH04J073097 Enhancer 0.3 Ensembl 600.7 -1.5 -1540 0.4 RBM22 HMGA1P2 lnc-ALB-8 ANKRD17 ENSG00000250220 ENSG00000221639 lnc-COX18-3 COX18
GH04J074092 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 30.7 +998.1 998149 8.6 GATAD2A CTCF PRDM10 REST ZNF629 RFX1 SOX13 IKZF1 JUND DDX20 CXCL2 ANKRD17 HMGA1P2 CXCL3 ENSG00000250220 CXCL8 EREG MTHFD2L AREG lnc-MTHFD2L-3
GH04J073255 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 24.2 +159.7 159660 5.2 SP1 CREB1 GATAD2A CTCF PRDM10 REST ZNF629 TFE3 IKZF1 NFKBIZ ANKRD17 ENSG00000250220 LOC102724832 HMGA1P2 piR-57460-526 COX18
GH04J072566 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 21.6 -530.2 -530152 3.6 CTCF HNRNPL PRDM10 ZNF629 ZNF512 LEF1 IKZF1 ZNF692 JUND DDX20 ADAMTS3 lnc-NPFFR2-2 HMGA1P2 piR-48799-087 NPFFR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMGA1P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMGA1P2 Gene

Genomic Locations for HMGA1P2 Gene
chr4:73,098,741-73,100,465
(GRCh38/hg38)
Size:
1,725 bases
Orientation:
Plus strand
chr4:73,964,458-73,966,223
(GRCh37/hg19)
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for HMGA1P2 Gene

Genes around HMGA1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMGA1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMGA1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HMGA1P2 Gene

Proteins for HMGA1P2 Gene

Post-translational modifications for HMGA1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMGA1P2 Gene

Domains & Families for HMGA1P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMGA1P2 Gene

Function for HMGA1P2 Gene

Phenotypes From GWAS Catalog for HMGA1P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMGA1P2 Gene

Localization for HMGA1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMGA1P2 Gene

Pathways & Interactions for HMGA1P2 Gene

PathCards logo

SuperPathways for HMGA1P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMGA1P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMGA1P2 Gene

Drugs & Compounds for HMGA1P2 Gene

No Compound Related Data Available

Transcripts for HMGA1P2 Gene

mRNA/cDNA for HMGA1P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HMGA1P2 Gene

No ASD Table

Relevant External Links for HMGA1P2 Gene

GeneLoc Exon Structure for
HMGA1P2

Expression for HMGA1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMGA1P2 Gene

genes like me logo Genes that share expression patterns with HMGA1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMGA1P2 Gene

Orthologs for HMGA1P2 Gene

Evolution for HMGA1P2 Gene

ENSEMBL:
Gene Tree for HMGA1P2 (if available)
TreeFam:
Gene Tree for HMGA1P2 (if available)

No data available for Orthologs for HMGA1P2 Gene

Paralogs for HMGA1P2 Gene

No data available for Paralogs for HMGA1P2 Gene

Variants for HMGA1P2 Gene

Additional Variant Information for HMGA1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMGA1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMGA1P2 Gene

Disorders for HMGA1P2 Gene

Additional Disease Information for HMGA1P2

No disorders were found for HMGA1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMGA1P2 Gene

Publications for HMGA1P2 Gene

  1. Retroposed copies of the HMG genes: a window to genome dynamics. (PMID: 12727900) Strichman-Almashanu LZ … Landsman D (Genome research 2003) 2 3
  2. Significant correlation between the breakpoints of rare clonal aberrations in benign solid tumors and the assignment of HMGIY retropseudogenes. (PMID: 11672774) Rogalla P … Bullerdiek J (Cancer genetics and cytogenetics 2001) 2 3
  3. [The expression of pseudogene HMGA1L2 in thyroid lesions]. (PMID: 17098703) Wang GL … Liang WH (Yi chuan = Hereditas 2006) 3

Products for HMGA1P2 Gene

Sources for HMGA1P2 Gene