Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HMBOX1-IT1 Gene

Subcategory (RNA class) for HMBOX1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HMBOX1-IT1 Gene

  • HMBOX1 Intronic Transcript 1 2 3 5
  • HMBOX1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HMBOX1-IT1 Gene

Previous GeneCards Identifiers for HMBOX1-IT1 Gene

  • GC00U934038
  • GC08P028808

Summaries for HMBOX1-IT1 Gene

GeneCards Summary for HMBOX1-IT1 Gene

HMBOX1-IT1 (HMBOX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HMBOX1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HMBOX1-IT1 Gene

Genomics for HMBOX1-IT1 Gene

GeneHancer (GH) Regulatory Elements for HMBOX1-IT1 Gene

Promoters and enhancers for HMBOX1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I028942 Enhancer 1.1 Ensembl ENCODE 0.4 -6.2 -6190 1.3 PKNOX1 ATF1 ARNT NCOA2 TCF12 GATA2 ATF7 NCOA1 MBD2 GMEB1 INTS9 HMBOX1 ENSG00000254129 KIF13B HMBOX1-IT1 ENSG00000273710
GH08I028941 Enhancer 0.7 Ensembl ENCODE 0.4 -7.9 -7905 1.4 ZNF362 PRDM6 ZNF644 PRDM1 INTS9 HMBOX1 ENSG00000254129 KIF13B HMBOX1-IT1 ENSG00000273710
GH08I029035 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +86.7 86692 2.1 CTCF STAT1 PKNOX1 USF1 JUN USF2 RAD21 MITF HMBOX1 ZNF143 LOC105379346 KIF13B HMBOX1 INTS9 ENSG00000254129 HMBOX1-IT1
GH08I028964 Enhancer 0.6 dbSUPER 0.4 +16.8 16847 3.3 CTCF MAX MAFG ZNF316 NFE2 EMSY MYC MAFK NFE2L2 MGA HMBOX1 INTS9 ENSG00000254129 KIF13B HMBOX1-IT1 LOC105379346
GH08I029003 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +54.8 54823 1.6 CTCF PKNOX1 MAX BMI1 ZNF2 KLF5 RAD21 RELA CC2D1A POLR2A LOC105379346 HMBOX1-IT1 HMBOX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HMBOX1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HMBOX1-IT1 Gene

Genomic Locations for HMBOX1-IT1 Gene
6,280 bases
Plus strand

Genomic View for HMBOX1-IT1 Gene

Genes around HMBOX1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HMBOX1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMBOX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HMBOX1-IT1 Gene

Proteins for HMBOX1-IT1 Gene

Post-translational modifications for HMBOX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMBOX1-IT1 Gene

Domains & Families for HMBOX1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HMBOX1-IT1 Gene

Function for HMBOX1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMBOX1-IT1 Gene

Localization for HMBOX1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMBOX1-IT1 Gene

Pathways & Interactions for HMBOX1-IT1 Gene

SuperPathways for HMBOX1-IT1 Gene

No Data Available

Interacting Proteins for HMBOX1-IT1 Gene

Gene Ontology (GO) - Biological Process for HMBOX1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HMBOX1-IT1 Gene

Drugs & Compounds for HMBOX1-IT1 Gene

No Compound Related Data Available

Transcripts for HMBOX1-IT1 Gene

mRNA/cDNA for HMBOX1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMBOX1-IT1 Gene

No ASD Table

Relevant External Links for HMBOX1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HMBOX1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HMBOX1-IT1 Gene

genes like me logo Genes that share expression patterns with HMBOX1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMBOX1-IT1 Gene

Orthologs for HMBOX1-IT1 Gene

Evolution for HMBOX1-IT1 Gene

Gene Tree for HMBOX1-IT1 (if available)
Gene Tree for HMBOX1-IT1 (if available)

No data available for Orthologs for HMBOX1-IT1 Gene

Paralogs for HMBOX1-IT1 Gene

No data available for Paralogs for HMBOX1-IT1 Gene

Variants for HMBOX1-IT1 Gene

Additional Variant Information for HMBOX1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMBOX1-IT1 Gene

Disorders for HMBOX1-IT1 Gene

No disorders were found for HMBOX1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HMBOX1-IT1 Gene

Publications for HMBOX1-IT1 Gene

No publications were found for HMBOX1-IT1 Gene.

Products for HMBOX1-IT1 Gene

Sources for HMBOX1-IT1 Gene

Loading form....