Aliases for HMBOX1-IT1 Gene

Subcategory (RNA class) for HMBOX1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for HMBOX1-IT1 Gene

  • HMBOX1 Intronic Transcript 1 2 3 5
  • HMBOX1-IT1 2 5 165
  • HMBOX1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG049865.2 91
  • HSALNG0064252 164

External Ids for HMBOX1-IT1 Gene

Previous GeneCards Identifiers for HMBOX1-IT1 Gene

  • GC00U934038
  • GC08P028808

Summaries for HMBOX1-IT1 Gene

GeneCards Summary for HMBOX1-IT1 Gene

HMBOX1-IT1 (HMBOX1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HMBOX1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for HMBOX1-IT1 Gene

Genomics for HMBOX1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for HMBOX1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J028941 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 0.7 -2.3 -2275 15.2 LEF1 IKZF1 ZNF174 JUND PRDM1 MTA2 PHF21A PKNOX1 ZNF24 MTA1 HMBOX1 INTS9 INTS9-AS1 ENSG00000254129 KIF13B HMBOX1-IT1 piR-43105-634 RF00017-6921 lnc-HMBOX1-3 lnc-KIF13B-2
GH08J028956 Enhancer 0.5 Ensembl 0.4 +7.2 7225 0.6 ZSCAN5C JUND PRDM6 RFX5 GATA2 POLR2A INTS9 INTS9-AS1 RF00017-6921 HMBOX1-IT1 HMBOX1 lnc-KIF13B-2 KIF13B
GH08J028960 Enhancer 0.2 Ensembl 0.4 +11.0 11025 0.2 HMBOX1 INTS9 ENSG00000254129 KIF13B RF00017-6921 HMBOX1-IT1 lnc-KIF13B-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HMBOX1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for HMBOX1-IT1 Gene

Genomic Locations for HMBOX1-IT1 Gene
chr8:28,949,676-28,955,955
(GRCh38/hg38)
Size:
6,280 bases
Orientation:
Plus strand
chr8:28,807,193-28,813,472
(GRCh37/hg19)
Size:
6,280 bases
Orientation:
Plus strand

Genomic View for HMBOX1-IT1 Gene

Genes around HMBOX1-IT1 on UCSC Golden Path with GeneCards custom track
HMBOX1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
HMBOX1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HMBOX1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HMBOX1-IT1 Gene

Proteins for HMBOX1-IT1 Gene

Post-translational modifications for HMBOX1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HMBOX1-IT1 Gene

Domains & Families for HMBOX1-IT1 Gene

Gene Families for HMBOX1-IT1 Gene

genes like me logo Genes that share domains with HMBOX1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for HMBOX1-IT1 Gene

Function for HMBOX1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HMBOX1-IT1 Gene

Localization for HMBOX1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HMBOX1-IT1 Gene

Pathways & Interactions for HMBOX1-IT1 Gene

PathCards logo

SuperPathways for HMBOX1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HMBOX1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for HMBOX1-IT1 Gene

Drugs & Compounds for HMBOX1-IT1 Gene

No Compound Related Data Available

Transcripts for HMBOX1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for HMBOX1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000619EAD_9606 lncRNA 347 5

HGNC: 43632,

Ensembl: ENST00000558292 (view in UCSC) ,

LncBook: HSALNT0134668,

LNCipedia: HMBOX1-IT1:1,

NONCODE: NONHSAT125771.2,

HMBOX1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HMBOX1-IT1 Gene

No ASD Table

Relevant External Links for HMBOX1-IT1 Gene

GeneLoc Exon Structure for
HMBOX1-IT1

No data available for mRNA/cDNA for HMBOX1-IT1 Gene

Expression for HMBOX1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HMBOX1-IT1 Gene

genes like me logo Genes that share expression patterns with HMBOX1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HMBOX1-IT1 Gene

Orthologs for HMBOX1-IT1 Gene

Evolution for HMBOX1-IT1 Gene

ENSEMBL:
Gene Tree for HMBOX1-IT1 (if available)
TreeFam:
Gene Tree for HMBOX1-IT1 (if available)

No data available for Orthologs for HMBOX1-IT1 Gene

Paralogs for HMBOX1-IT1 Gene

No data available for Paralogs for HMBOX1-IT1 Gene

Variants for HMBOX1-IT1 Gene

Additional Variant Information for HMBOX1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HMBOX1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HMBOX1-IT1 Gene

Disorders for HMBOX1-IT1 Gene

Additional Disease Information for HMBOX1-IT1

No disorders were found for HMBOX1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HMBOX1-IT1 Gene

Publications for HMBOX1-IT1 Gene

No publications were found for HMBOX1-IT1 Gene.

Products for HMBOX1-IT1 Gene

Sources for HMBOX1-IT1 Gene